LOCUS ADR18081.1 608 aa PRT BCT 08-JUN-2015 DEFINITION Calditerrivibrio nitroreducens DSM 19672 GTP-binding protein TypA protein. ACCESSION CP002347-164 PROTEIN_ID ADR18081.1 SOURCE Calditerrivibrio nitroreducens DSM 19672 ORGANISM Calditerrivibrio nitroreducens DSM 19672 Bacteria; Deferribacteres; Deferribacterales; Calditerrivibrionaceae. REFERENCE 1 (bases 1 to 2157835) AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011) PUBMED 21475587 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 JOURNAL Unpublished REFERENCE 3 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4087656 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 collection_date :: Missing lat_lon :: 36.829513 138.217163 depth :: Missing alt_elev :: Missing country :: Japan environment :: Host num_replicons :: 2 ref_biomaterial :: DSM 19672, NBRC 101217 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 18599715 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04007 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata Cell Shape :: Vibrio-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 7.0 - 7.5 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Calditerrivibrio nitroreducens DSM 19672" /mol_type="genomic DNA" /strain="DSM 19672" /isolation_source="terrestrial hot spring" /type_material="type strain of Calditerrivibrio nitroreducens" /db_xref="taxon:768670" /country="Japan: Nagano, Yumata" /lat_lon="36.829514 N 138.217163 E" protein /locus_tag="Calni_0168" /note="COGs: COG1217 membrane GTPase involved in stress response; InterPro IPR000795: IPR005225: IPR006298: IPR004161: IPR 000640; KEGG: dvm:DvMF_0822 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain" /transl_table=11 BEGIN 1 MKKVLRNDKI RNIAIIAHVD HGKTSLVDSL FKYSGFFRED QQVDDRIMDS MELERERGIT 61 IAAKNCSVYY KGVKINIIDT PGHADFGGEV ERALSMVDGA ILLVDASEGP LPQTRFVLSK 121 AFHAGLKIIV AINKIDRKDA RPAEVLDEIY ELFFDLDAND EQIEFPVLYT IGREGVVKRS 181 LEDENGDMSI LLDAILEEFP GPSYIENEPF QMLVSDLGYS DYLGRLAIGK VFNGSVKQND 241 TLVCINGNGE NIPLKVSKIQ SYVGLNLKEA EVSEEGDIIV ISGIDNVMIG DTICKKDFPK 301 PLKRITVDEP TVSMKFMANT SPFAGREGRF VQSSKIKERL YKEAMRNVSI KVEETEDADD 361 LIVKGRGEFQ LAIILETMRR EGYELCVGRP EVIMKKKGDQ LLEPIEHLYV DCDEPFLGIV 421 TEKISLRKGK MINLINKGSG RIRAEFTIPS RGLIGYRDEF LSDTKGTGLI SSYLKGYEEY 481 RGDFPVRYSG SLVSDRQGKA VAYALFHLEP RGRLFVVPGD DVYEGMIIGE YNKMGDLDVN 541 PCKEKKLTNM RAAGKDENII LRPVLPLTLE QAINFIAEDE LAEITPKNIR LRKEILSAQD 601 RHNRKKEK //