LOCUS ADR17922.1 796 aa PRT BCT 08-JUN-2015 DEFINITION Calditerrivibrio nitroreducens DSM 19672 DNA gyrase subunit B protein. ACCESSION CP002347-5 PROTEIN_ID ADR17922.1 SOURCE Calditerrivibrio nitroreducens DSM 19672 ORGANISM Calditerrivibrio nitroreducens DSM 19672 Bacteria; Deferribacteres; Deferribacterales; Calditerrivibrionaceae. REFERENCE 1 (bases 1 to 2157835) AUTHORS Pitluck,S., Sikorski,J., Zeytun,A., Lapidus,A., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R., Han,C., Goodwin,L., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brambilla,E., Djao,O.D., Rohde,M., Spring,S., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Land,M. TITLE Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) JOURNAL Stand Genomic Sci 4 (1), 54-62 (2011) PUBMED 21475587 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of chromosome of Calditerrivibrio nitroreducens DSM 19672 JOURNAL Unpublished REFERENCE 3 (bases 1 to 2157835) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Zeytun,A., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4087656 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Calditerrivibrio nitroreducens Yu37-1, DSM 19672 collection_date :: Missing lat_lon :: 36.829513 138.217163 depth :: Missing alt_elev :: Missing country :: Japan environment :: Host num_replicons :: 2 ref_biomaterial :: DSM 19672, NBRC 101217 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Anaerobe isol_growth_condt :: 18599715 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04007 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Terrestrial hot spring; Japan, Nagano, Yumata Cell Shape :: Vibrio-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 7.0 - 7.5 Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454 ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Calditerrivibrio nitroreducens DSM 19672" /mol_type="genomic DNA" /strain="DSM 19672" /isolation_source="terrestrial hot spring" /type_material="type strain of Calditerrivibrio nitroreducens" /db_xref="taxon:768670" /country="Japan: Nagano, Yumata" /lat_lon="36.829514 N 138.217163 E" protein /locus_tag="Calni_0005" /EC_number="5.99.1.3" /note="COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR001241: IPR000565: IPR018522: IPR000408: IPR 011557: IPR003594: IPR013506: IPR006171: IPR002288; KEGG: dap:Dacet_2871 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit" /transl_table=11 BEGIN 1 MSEILNNSEN SYSEESIKVL EGLEAVRQRP GMYIGSIDVK GLHHLVYEVV DNSIDEAMAG 61 YCKNIFVTLH VDGSVTVEDD GRGIPVGIHP TAKKPTVEVV MTTLHAGGKF NSGAYFASGG 121 LHGVGVSVVN ALSEYLEVTV KRDGKVYFQR YERGIPVTEF KEIGKTDKTG TKVRFKPDSE 181 IFETTEFHFD SLAKRFRELA FLNSGIRIKA VDEASEKVHD FCFDGGIVSY IKFLNKGKEL 241 LFDDPIYVSG KYENVVVECA ILYNTSFDEK IISFVNNIHT EEGGTHEAGF KSSFTKAFNN 301 FINKYNLLKD KISLEGDDVR EGMSAIVSIK LNEPMFEGQT KSKLGSSIGK VAVESVLGSF 361 LPDFFEENSV VVKKILDKAV QAYRAREAAR KAKELTRRKN ALDISTLPGK LADCQEKDPA 421 LSEIFIVEGD SAGGSAKQCR DRRFQAILPL KGKILNVEKA RYDKLLSNNE IKTIITALGC 481 GIGKEDFDLN KLRYHKIIIM TDADVDGAHI STLLLTFFFR YMRPIIERGF LYIARPPLYK 541 IKKNKVERYI HNEEEFEDFI LDMGLDGVSI PEISEIRYRE IIRNLFVMNK LISKYEKKGY 601 LEKLILNIAT HQNLEPEYLS EKSYVEDLMN MLDQKGAFEG YHSHFIDFNE EYNRYNIFFS 661 SSSGSVYAIN TDFLTTPEFK EIKRLARFLN EIGGVPIKIL VDGEELYFDK VSELVNFIES 721 RGKKGLTIQR YKGLGEMNPE QLWETTVDPE RRVLYRVTIE DAEEADGLFS LLMGDVVAPR 781 REFIEENALY AKNIDI //