LOCUS ADH91572.1 965 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 outer membrane autotransporter
barrel domain protein protein.
ACCESSION CP002026-4235
PROTEIN_ID ADH91572.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_4307"
/inference="protein motif:TFAM:TIGR01414"
/note="KEGG: azc:AZC_0546 outer membrane autotransporter
barrel protein; TIGRFAM: outer membrane autotransporter
barrel domain protein; PFAM: Autotransporter beta- domain
protein"
/transl_table=11
/db_xref="InterPro:IPR005546"
/db_xref="InterPro:IPR006315"
/db_xref="InterPro:IPR011050"
BEGIN
1 MSIPVVSPRK AGRGAAPRAT SLLRSTALCG VAGLALLALP VGARAQESAT IPLHTGSDTH
61 HFSNQIYVAV GGGEASRVLM DTGSTGLYLH RDLIGPDSTI IMSGGEPISF KYGYSSGNEL
121 KGYYVSAPVA FPEASTALST GAITVGAVTQ IDCKDDSDCP GWPDGQHGVM GVAYSAEPAA
181 VFNPFAQLAG NYGNGFIVVS NDLGDPGVTP HVVVGLTPEN TAGFVWSQFQ PDTGGTQPAG
241 LNAWNTKTIN TCFSVNNGSP GCFITVFDTG AALGAFETGT SGEQRGEVAP GSTVTTTIPG
301 VISFTNVAGT KLNENVYVYD PAHGGTPGYN SGAGVFRYYV VAYDAVNGRI GFAPLQNVLL
361 GTIYADSDAD LGVPGGGVLL AGQLVTLHGF STDRSIAFGT NAGLSVFGSA SFGGTLSGGV
421 NMDVAIAPGG VLALSGTNLY SGIMTVSGGA LVVNGQLPAT LLLDGTRLSG SGTIGAVAAA
481 SGSIVAPGNS IGTLSVLGNA IFAPGATYAA EIGASGSSDL LAVGGTASLA GTLAIVPYGP
541 GTPVLGSRYT LLSAAGGLNG QFQSVQAADF GAAGTAFPFL EPLVSYSATT AELTMGRSAV
601 SFTNAARTSN QFAMARAADS ASAASNAVVA LSGLNTITAT PALQALSGEI YASTQSVIQQ
661 QSAYLRDAVG ARLRQAAGEP AAVGPTTATT SGLPLSFWVQ GFGGWGDTSS NGNAASVSNT
721 IGGAVFGLDT PIGQDWRAGL VGGYSRSSFS QANGSGDSDN YDVGLYAGGS LGTARLALGA
781 AYGWHDVAVS RSVAFSGYAS GAAGDYDANS FQAFGELSYD LVLDRLTLTP FGGLAYVGVD
841 GAELAESGTG AALDVATADM DALYSALGLR FSLPLAVNGH DVWLGGTLGW QHAFGDVTPS
901 TTVAFATGSR AVALGGVPIA ENAALLGLEL AYAPSDTTRL ALKYAGQLAS SANQNAIFAE
961 LVVKF
//