LOCUS ADH91121.1 951 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 formate dehydrogenase, alpha
subunit protein.
ACCESSION CP002026-3784
PROTEIN_ID ADH91121.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_3851"
/inference="protein motif:TFAM:TIGR01591"
/note="KEGG: xau:Xaut_3479 formate dehydrogenase, alpha
subunit; TIGRFAM: formate dehydrogenase, alpha subunit;
PFAM: molybdopterin oxidoreductase; molybdopterin
oxidoreductase Fe4S4 region; NADH:ubiquinone
oxidoreductase, subunit G, iron-sulphur binding;
ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain
protein; molydopterin dinucleotide-binding region"
/transl_table=11
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR001450"
/db_xref="InterPro:IPR006478"
/db_xref="InterPro:IPR006655"
/db_xref="InterPro:IPR006656"
/db_xref="InterPro:IPR006657"
/db_xref="InterPro:IPR006963"
/db_xref="InterPro:IPR009010"
/db_xref="InterPro:IPR017896"
/db_xref="InterPro:IPR017900"
/db_xref="InterPro:IPR019574"
BEGIN
1 MSLVHEIDYG TPAPKTDKMV TLTIDGMEVT VPEGTSIMRA AMEMGTQIPK LCATDSLEAF
61 GSCRLCLIEI EGRNGTPASC TTPVAPGIKV HTQTPRLAQL RKGVMELYIS DHPLDCLTCA
121 ANGDCELQDM AGAVGLREVR YGMEGANHFA PTSELVMPKD ESNPYFTYDP AKCIVCNRCV
181 RACEEVQGTF ALTISGRGFG SRVSPGQSEA FLTSECVSCG ACVQACPTAT LSEKRLIEIG
241 TPEHSVVTTC AYCGVGCTFK AEMRGQEVVR MVPWKDGKAN RGHSCVKGRF AWGYATHQDR
301 ITKPMIRAKV TDPWREVSWE EAINHTAFEL KRIQDSYGRK AVGGITSSRC TNEEAYLVQK
361 IIRAGFGTNN VDTCARVCHS PTGYGLNQAF GTSAGTQDFD SVEDSDVIMV IGANPTDGHP
421 VFGSRMKKRL REGAKLIVVD PRRIDLVKSP HIKAEFHLPL QPGTNVAIVT ALAHVVVTEG
481 LVNEEYVRQF CDWDEFQDWA EFVADARHSP EEVEKLSGVP AELIRGAARL YATGGNAAIY
541 YGLGVTEHSQ GSTTVMAIAN LAMATGNIGR RGVGVNPLRG QNNVQGSCDM GSFPHELPGY
601 RHISDDATRA TFEAMWGTPL DPEPGLRIPN MLDAAVDGTF KAIYIQGEDI LQSDPDTKHV
661 AAGLAAMELV IVQDLFLNET ANYAHVFLPG CTFLEKDGTF TNAERRIQLV RKVMAPKNGY
721 GDWEVTQLLA NAIGLNWNYT HPAQIMDEIA ALTPTFAGVS FKKLDEMGSV QWPCNDANPE
781 GMPIMHINGF ARGKGKFVVT EYVPTDERTG ARFPLLLTTG RILSHYNVGA QTRRTANVAW
841 HPEDVLEIHP HDAEQRGVRD GDWVRIDSRA GSTTLRAEIT DRVAPGVVYT TFHHPGTQAN
901 VVTTDFSDWA TNCPEFKVTA VQIARSNGPS EWQEDYDDFA RQSRRIAVAA E
//