LOCUS ADH90783.1 683 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 selenocysteine-specific
translation elongation factor protein.
ACCESSION CP002026-3446
PROTEIN_ID ADH90783.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_3509"
/inference="protein motif:TFAM:TIGR00475"
/note="KEGG: azc:AZC_1153 translation elongation factor;
TIGRFAM: selenocysteine-specific translation elongation
factor; PFAM: protein synthesis factor GTP-binding;
elongation factor Tu domain 2 protein; Elongation factor
SelB winged helix 2; Elongation factor SelB winged helix
3"
/transl_table=11
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004535"
/db_xref="InterPro:IPR009000"
/db_xref="InterPro:IPR009001"
/db_xref="InterPro:IPR011991"
/db_xref="InterPro:IPR015190"
/db_xref="InterPro:IPR015191"
BEGIN
1 MIIGTAGHID HGKTALVGAL TGVDTDRLKE EKARGISIDL GFAYLPTEAG TLGFIDVPGH
61 EKFIHTMLAG ASGIDFALLI VAADDGVMPQ TREHLALLDL LGISSGLVTL TKADLADAAR
121 RGEVEAEIAA LLDGTSLEGV EVLAVSAVTG EGIEELRARL VAAGRDFSAR AAEGRFRLAV
181 DRSFTLSGAG TVVTGTVLSG RVRVGDQLVV SPSGIAARVR SIHAQNRKAE EGRAGDRCAL
241 NLAGEGVSHE AIHRGDMVLD ASLHAPTERI DTSLRVLAGE PKPLGQWFPV RFHHGSTEVG
301 ARLVPLSEDA IPPGGEGLVQ IVLEKPIAAA AGDRYVIRDT SAQRTIGGGR LIDLRAPGRK
361 RRTPERLAQL AAMGEADPDA AVALLLAGEP FHLDLSAFAR DRALGGEAVQ DIAQRLGLVT
421 FAAGGTLTAL SPERWKIFRA TLLAELERFH DANPDLPGMG AERLRLTVPP RLAKPVFTEA
481 LRRLAGEGAL GLDGAWVRLA GHEVRLTRAD ELLWELIEPK LSGTERFRPP RVRDLAGLTG
541 EAEADIRRLM KLLSRMGRVD EVAHDHFFLR PVVTGMVAMA RELAAAAPGG QFPAAAFRDR
601 IERDEHAVGR KVAIQILEFF DRHGVTLRRG DLRRINPHRL DLFGAIGEND PASATSPAAG
661 RASHPVMGPD FKSGRTISMI GDT
//