LOCUS ADH90408.1 725 aa PRT BCT 28-JAN-2014 DEFINITION Ancylobacter novellus DSM 506 DNA ligase, NAD-dependent protein. ACCESSION CP002026-3071 PROTEIN_ID ADH90408.1 SOURCE Ancylobacter novellus DSM 506 ORGANISM Ancylobacter novellus DSM 506 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Ancylobacter. REFERENCE 1 (bases 1 to 4765023) AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A., Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C., Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M., Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and Woyke,T. TITLE Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)) JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012) PUBMED 23450099 REFERENCE 2 (bases 1 to 4765023) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Beatson,S., Kappler,U. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4084204 Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au) Organism available from DSMZ: DSM 506 Contacts: Ulrike Kappler (u.kappler@uq.edu.au) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Starkeya novella DSM 506 Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443, NBRC 12443, NCIB 9113 GOLD Stamp ID :: Gi02557 Greengenes ID :: 4661 Funding Program :: DOE-CSP 2008 Sequencing Depth :: 21x Isolation Site :: Soil Temperature Range :: Mesophile Temperature Optimum :: 26 - 30C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Energy Source :: Chemolithotroph, Heterotroph ##Metadata-END## FEATURES Qualifiers source /organism="Ancylobacter novellus DSM 506" /mol_type="genomic DNA" /strain="DSM 506" /isolation_source="soil" /type_material="type strain of Thiobacillus novellus" /db_xref="taxon:639283" protein /locus_tag="Snov_3133" /EC_number="6.5.1.2" /inference="protein motif:TFAM:TIGR00575" /note="SMART: NAD-dependent DNA ligase; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: azc:AZC_0149 NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; zinc-finger NAD-dependent DNA ligase C4-type; BRCT domain protein" /transl_table=11 /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR001679" /db_xref="InterPro:IPR004149" /db_xref="InterPro:IPR004150" /db_xref="InterPro:IPR010994" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR013839" /db_xref="InterPro:IPR013840" /db_xref="InterPro:IPR016027" /db_xref="InterPro:IPR018239" BEGIN 1 MSARTPDIDV EKLTADEAAK EHARLGDEIA GHDRRYYQDD APSVSDADYD ALRRRYEAIE 61 AQFPELKGID SLSEKVGAAP SSKFAKVRHR VPMLSLGNAF ADEEVEEFVA RVRRFLGLSA 121 DAEVAFTAEP KIDGLSCSLR YENGQFVQAA TRGDGFEGED VTNNVRTIGE IPERLKGNDV 181 PGIFEVRGEV YMGHADFAAI NERQSASGKP LFANPRNAAA GSLRQLDPKI TASRPLRFFA 241 YAWGEVADGA LPSDTQFGVI EAFSRWGLPT NPLTVLCRSA QELLAHYHAI EEQRASLGYD 301 IDGVVYKVDS LALQQRLGFV SRSPRWALAH KFPAQRAITQ LERIEIQVGR TGALTPVAKL 361 TPITVGGVVV SNASLHNEDY IKGIGGDGLP IRGTFNDEPV DIREGDWVVI QRAGDVIPQV 421 VSVELERRPK DAKPYQFPTI CPACGSHAVR EDGEAVRRCT GGLICPAQAV ERIRHFVSRD 481 AFDIEGLGEK QVQAFFDWGL VKQPADIFTL EARDSAPDSL TRLKNRDGWG ETSAKNLFAA 541 IAARRKVPVN RFLYALGIRH IGETNAKRLM RHYPTIEALR EAALAAEMPG EAYPKGNEAW 601 AEMNAIEGIG AVVAEAVVDF FHEPNNEAAL DALLKEVTPE PMEAVAGGGA VAGKTVVFTG 661 ALEKMTRDEA KAMAERLGAK VAGSVSKKTD YVVAGADAGS KLAKARELGV SVLTEDEWLE 721 LAGAG //