LOCUS ADH89730.1 853 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 excinuclease ABC, B subunit protein.
ACCESSION CP002026-2393
PROTEIN_ID ADH89730.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_2435"
/inference="protein motif:TFAM:TIGR00631"
/note="TIGRFAM: excinuclease ABC, B subunit; PFAM:
helicase domain protein; type III restriction protein res
subunit; UvrB/UvrC protein; KEGG: azc:AZC_3127
excinuclease ABC subunit B; SMART: DEAD-like helicase;
helicase domain protein"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR004807"
/db_xref="InterPro:IPR006935"
/db_xref="InterPro:IPR009055"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MAKASRPGGF GERSQRAFEP AQVSTLDPAL AEKLGVAPTS GASATVAALS ALIEGGRAEV
61 DRQVWTPHRP ARPEKSEGGV KFVLKSDYTP NGDQPKAIDD LVAAASEGER DQVLLGVTGS
121 GKTFTMANVI QRLQRPALVL APNKTLAAQL YGEFKSFFPD NAVEYFVSYY DYYQPEAYVP
181 RTDTFIEKES SINEQIDRMR HSATRSLLER DDVIIVASVS CIYGIGSVET YASMTFKIEV
241 GERIDQRALL ADLVALQYKR TQGDFGRGTF RVRGDVIEIF PAHYEDRAWR VSLFGDEVES
301 IQEFDPLTGQ KSQDLKFVKL YANSHYVTPR PTLIQAIAGI KNELRHRLDE LNAMGRLLEA
361 QRLEQRCTFD LEMMEATGSC AGIENYSRWL TGRLPGEPPP TLFEYVPDNA LIFVDESHVT
421 VPQIGAMYRG DFRRKATLAE YGFRLPSCMD NRPLRFEEWE AMRPQTVHVS ATPGKWEMER
481 TGGVFVEQVI RPTGLVDPEV EVRPARTQVD DLLGEVRQTA AKGYRTLVTT LTKRMAEDLT
541 EYLHENGIRV RYMHSDIDTI ERIEIIRDLR LGAFDVLIGI NLLREGLDIP ECGLVAILDA
601 DKEGFLRSET SLVQTIGRAA RNVDGRVVLY ADSITGSMER AMAETERRRA KQIAWNTEHG
661 ITPESVRKAI GDILNSVYER DHVTVDAGLA EEGATYGHNL AAVIADLEKR MRTAAADLDF
721 EQAARLRDEI KRLQATELVL SDDPLARQEN VDDRTGGYRG ERKYGRSANL PEKKGGGRRS
781 SPGHVSSGHE ARADEAQARY DAGGASRIVR PSLDDMGPGT DRTEPLRVED WVRPERPDPM
841 TKGYRKGGRR KGR
//