LOCUS ADH88155.1 1422 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 protein of unknown function
DUF490 protein.
ACCESSION CP002026-818
PROTEIN_ID ADH88155.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_0830"
/inference="protein motif:PFAM:PF04357"
/note="PFAM: protein of unknown function DUF490; KEGG:
xau:Xaut_4225 hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR000276"
/db_xref="InterPro:IPR007452"
BEGIN
1 MKRALRSVLF ALLLLVALVA AAFGVLQTTP GKALLARTAS SLASSGGMQV DIRDISGFVP
61 FDMGVGAIEL ADAKGPFARI DGARLDWRPL ALLSGRLDVT TLAAQRVELQ RRPELPPSEP
121 STSSGGSSFA LPVRVETLTI PDIVLDEPVL GHAAQLSLTG SADLASLAQG LSLTFALERR
181 DEPGSVSGSA AYAPEGERLD LDIAAREPAG GLIARAAGME GLPALEATLK GSGPLDAWNG
241 QLALSAGDVA AVSGAAGIRA TPQGRRLTFG LDADIARLLP ADLAPLFEGR TELAGAATLS
301 NERDIAIENF TARAAGFNAS AGGTLDAANT ADLTFDVTLG DAARFAALAR GATWRSLRLA
361 GTAKGALAAP AVEARLDAEG LDGMGYGAGT LAATLRTVPD AVGNLALSVE GTAEGLTAID
421 PQVAAALGTV GNFSAAGTLP AGGDPLRATL TGAAIRLAAL TSQFTGRAGA DAIDGEVKVE
481 RLDLAAFAPL AGRPLAGTAA FDANVSAAAD LSRASLNLRG SASGLATGIA QLDGLVGKSL
541 NVDGALARDG ANAISVSNLK IDTEGISATV DGRIATDVAD LTAKATLDNL ARLDPRLAGA
601 AQAEAAFSGS LEDLGVKAKV LVPQGSAEGR PIRDLALDVT ATDITGAVAG TLNLTGEVAG
661 KPARGTAALT TEGNGTRRLS GLDLSIGSVT AKGDVALRTD NLAEGSLTIA AGDLADVAAL
721 ALTQVAGQLN ADVRLDAADG RQRAAVKASA ERLQAMGRSV GSATIDATVV DPTGIPLVNG
781 TADLRAVDLS GVVIETASLR ANGNATGTDL TLDAVAQGTT LRTAGRLEPR EGGARLRLDR
841 LTAARGTLNA AMTAPATFTL ANGAVTIDRF ALSASGGTAT VSGTAGETLD LSVDLRALPL
901 SLANLAAPSA NLSGTLAGTA RIGGTAAAPT GNYDLRVARL SNPDLASSGA GPFDITANGT
961 LAGGRANLRA TVSGQHLQGF TVNGSVPLGA GELDLALRGA INLAIANPLL ATTGARVTGI
1021 ANVDATIRGT AAAPRAGGTV RVSGGRFDDA VNGVSLDQIE AVLTGTDRSV TLTSLRARTT
1081 NGGSVTGRGN VALDPAAFYP GRVDLDLTNA ALVNSDLMRL VAEGRLGVEG AFLRDPRLTG
1141 RLTLRALDIN IPDRFPGGVQ NLNVRHVNDG GRRPRATAPP RPSAQQARGS GLPLDLVVSA
1201 PNNNVFVRGL GIEAQLGGEL KLSGTSRAPV TLGAFELRRG TFDFGGRRLT FTRGRITFTG
1261 TTDPELDFVA ETTSADITAR VLVSGPASRP VVSFDSTPTL PQDEVLSRLL FGRAAGSLSA
1321 GQAIQLAQVV AQFSGGAGVL ENMRRSLGVD SLEVGTNAEG TGGQVGIGRR LNDNIYLGVR
1381 QGTTPGSSRV TVDVDVTKNI RLQGATGADG SAEVGIGAQW DY
//