LOCUS ADH87943.1 874 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 PAS/PAC sensor signal transduction
histidine kinase protein.
ACCESSION CP002026-606
PROTEIN_ID ADH87943.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_0610"
/inference="protein motif:TFAM:TIGR00229"
/note="TIGRFAM: PAS sensor protein; PFAM: ATP-binding
region ATPase domain protein; histidine kinase A domain
protein; PAS fold domain protein; KEGG: mno:Mnod_5204
PAS/PAC sensor signal transduction histidine kinase;
SMART: ATP-binding region ATPase domain protein; histidine
kinase A domain protein; PAS domain containing protein"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR009082"
/db_xref="InterPro:IPR013767"
BEGIN
1 MNTPTDGFGS AALDALRAQA ATVLAAAAPA VLVHADGTLI AANPAGRAVL DPAMAAGLAA
61 RLAPGLRPNR PPRLERVRLA GRLTPATFAC TLVAAGSARA VLLVGLDIAP VGMPAEAAPA
121 APSPAEEPHD APTRFTWRTG LDARIGHVDP RLASALGRVP EEIAGLDWQA LGAPGAHRAA
181 LEGLSFSRLP VLLPTARGDA LDIELGGAPI RGEGMRGFGL IKGRRASPER PVQAPAPRPA
241 APPIVPPVAP PIPPRAAEPP PAPAAPTAPA AAEPTSPVRV TLSLVPSAPN VVPLRGNGEN
301 GVRASWEGLS NGERNAFREI ARALGAKLEG VDDDFPPPAE PAPAEPAAAP APTASVAIPP
361 AAELPAAVPP LPPRPEPEGL QRVLSDGERP VLDRLPLAML AFRGDHLLYA NRALLEWTGH
421 ADLAALEAAG GLATLFGAQR AGGDEESRAL TLLTATGHGI TVEARLMSAP WEGGTAMLYV
481 LHRLDAVTDE RIRQAELALR QAENAERELR AILDTATDGV VLIDKAGTIL SMNHPAEALF
541 GFNAGDVQGE AITLLLAPES HRAAIDYLDG LASNGVASVL NDGREVIGRV REGGLIPLFM
601 TMGRIGDDPT KFCAVLRDIT QWKKAEEELT EAKHLAERAN LAKSDFLAKI SHEIRTPLNA
661 IIGFSEVMME ERFGAIENQR YRDYLRDIHS SGEHLISLIN DLLDLSKIEA GKLDLAFTSV
721 ALNEIVQQCM AIMQPQANRE RIVVRSSLAT DLPPVVADAR SIRQIVLNLV SNSVKFTQPG
781 GQVILSTTLT EQGEVVLRVR DTGIGMSEAD IAIAMEPFRQ IATSGRAGSG GTGLGLPLTK
841 ALAEANRASF NIRSAVDVGT IVEITFPSTR VLAE
//