LOCUS ADH87638.1 1144 aa PRT BCT 28-JAN-2014 DEFINITION Ancylobacter novellus DSM 506 double-strand break repair helicase AddA protein. ACCESSION CP002026-301 PROTEIN_ID ADH87638.1 SOURCE Ancylobacter novellus DSM 506 ORGANISM Ancylobacter novellus DSM 506 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Ancylobacter. REFERENCE 1 (bases 1 to 4765023) AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A., Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C., Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M., Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and Woyke,T. TITLE Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)) JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012) PUBMED 23450099 REFERENCE 2 (bases 1 to 4765023) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Beatson,S., Kappler,U. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4084204 Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au) Organism available from DSMZ: DSM 506 Contacts: Ulrike Kappler (u.kappler@uq.edu.au) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Starkeya novella DSM 506 Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443, NBRC 12443, NCIB 9113 GOLD Stamp ID :: Gi02557 Greengenes ID :: 4661 Funding Program :: DOE-CSP 2008 Sequencing Depth :: 21x Isolation Site :: Soil Temperature Range :: Mesophile Temperature Optimum :: 26 - 30C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Energy Source :: Chemolithotroph, Heterotroph ##Metadata-END## FEATURES Qualifiers source /organism="Ancylobacter novellus DSM 506" /mol_type="genomic DNA" /strain="DSM 506" /isolation_source="soil" /type_material="type strain of Thiobacillus novellus" /db_xref="taxon:639283" protein /locus_tag="Snov_0304" /inference="protein motif:TFAM:TIGR02784" /note="KEGG: azc:AZC_0714 putative exonuclease V; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase" /transl_table=11 /db_xref="InterPro:IPR000212" /db_xref="InterPro:IPR014016" /db_xref="InterPro:IPR014017" /db_xref="InterPro:IPR014151" BEGIN 1 MSELTDLAPG PLRAATALQT TASDPLLSAW VSANAGSGKT HVLARRVIRL LMRGVPPGRI 61 LCLTYTKAAA ANMANRVLDE LRRWATLDDE TLDKEIVRTD GGRPDALRRA HARRLFAQAL 121 ETPGGLKIQT IHAFCGALLH AFPFEAGVPA GFGELEEAAR LELLARVRAD VVLEAAGRPE 181 SALGQALGLI VGTTSDDGID EIIGAMVADP AALEASDDDL AAAVGLDRPI ASRDIEHRII 241 AEALIARGAW LGLGQALIEE GGNCARRGRS LLEAAAAPDE GTADTYARVF LKEDGEPYGD 301 SQFGAAPIRA KYPLLLAERD RLAPLAQLLS AARALERSRG VLILGREAAR RYERAKAARG 361 VLDFSDLVDA ARRLLASGAS AWVHYKLDQG IDHVLLDEAQ DTSPEQWEVI RPLVAEFFAG 421 EGARAEARYG AASLPRTLFV VGDEKQSIFS FQGADPRRFD TVRRELMRLT GGVGFEHIEL 481 RHSFRSAPGI LAAVDTVFHA ETAYQGLSAL AEPPVHEAIH AALPSLVELW EPEAPSEKVD 541 IDAWQRPLDA PAADDPKGRL ARKIAGHIAA RIREGFPVTG RHGTRPARPG DFLILVRRRD 601 SLFEAIIREL KEARVAVAGA DRLTVAQHIA VMDLMALGDA LLARDDELAL ACALKSPLFG 661 LDDSDLMKLA PERAGLLEDA LFARAGENPH WRAAAERLRR LRPEARRLRP FDFYARVLGR 721 ERGRAAMIAR LGPEAADALD EMLALARSYE NVEAPSLAGF LAFLRRGGAE AKRDMEAGRD 781 EVRVMTVHGA KGLEAPYVIL ADTTSGPMTR RAAGLLRVEL PDGRRAALHA PSKKGDTPAM 841 ARARAQGDAA QQDEYRRLLY VALTRAESAL VLAGADGGRK RPADCWYDLV RGALEPEAVE 901 QPAAGFAGTV RRWRSAVHEE IIAAPAVAAI AAAPDEAERA LARALSRPIE EPAARAALRP 961 SASSLLSAAP EGPEALALHR GELLHRLMAA LASLPPEERA APGRRLLAAA GDFEEAAREE 1021 LLTEALGVLA VPGLADLFGP GSLAEVPLVG ELEDGTPVSG RIDRLAVLGD RILIADFKTD 1081 RRVPREASSL PPAHVRQVAL YARLLRRLYP GRPIEARLVY TAGPLAHALG ADVLERIVES 1141 VTSQ //