LOCUS ADH87418.1 1190 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 multi-sensor hybrid histidine
kinase protein.
ACCESSION CP002026-81
PROTEIN_ID ADH87418.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_0081"
/inference="protein motif:PFAM:PF02518"
/note="KEGG: azc:AZC_3923 response regulator receiver;
PFAM: ATP-binding region ATPase domain protein; histidine
kinase A domain protein; PAS fold-4 domain protein;
response regulator receiver; SMART: ATP-binding region
ATPase domain protein; histidine kinase A domain protein;
response regulator receiver"
/transl_table=11
/db_xref="InterPro:IPR001734"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR009082"
/db_xref="InterPro:IPR011006"
/db_xref="InterPro:IPR013656"
BEGIN
1 MLQAWTIIAV ALVYIGFLFA VASFGDRRLP RSRRRGRPYI YSLSLAVYCT SWTFFGSVGL
61 ATTQGVNFLT IYIGPIFVFA LGTPFLLRMV RLAKGQNITS IADFVAARYG KSQGVAALVA
121 CVAIVGSLPY IALQLKAVSA SLLAMLGDFD GLGLPYPVVG DLALTIAVAM AVFAVLFGTR
181 HIDATEHQEG LMLAVATESI VKLVSFLAVG LFVVFGMFSG PFDLLDQAAE KGVLPVLTQG
241 ISVGSWAAMT LLSALAILLL PRQFHVAVVE NTSEQEIRTA SWLFPLYLVL INLFVIPIAI
301 AGLVAFPPGF IDGDMYVVTL PLSAGSHVMS LVAFVGGLSA ATAMVIVETV ALAVMVSNDI
361 FMPLMVRGRR LRDAAEANRA AADGPPDTGA DGQTDGHADM GRRLLTVRRI AIFAILLLAY
421 LYYRVTGEAQ LAQIGLLSFA AVAQFGPALL LGLVWRRGTA LGALAGIAAG IALWAYTLLL
481 PSLVDAGLFT HALLQEGPFG LSMLRPQTLL GVQASPLVHG VLWSLTINVL VFLAVSLMRK
541 PTPIERLQAS VFVESDHAPS APSFRLWRSP VTVGELVSTV ARYLGEERTR ASFESISAMR
601 GISLEPSREA DFQLIRYAEH LLASAIGAAS SRLVLSLMLR KRTVSTKAAL KLLDDASAAI
661 QYNREILQTA LDHVRQGIAV FDRDLRLITW NRQFGEMLEL PPEILRIGVS IDQIIRFNAT
721 GGQFGPGPVE EIVREKLDRY ARRNVVFQER LTPRGVVMEV RVNTMPDGGV VVTFTDITPS
781 VEAAEALERA NETLERRVRE RTKALEKLNT QLAQAKSEAE EANISKTRFL AAASHDILQP
841 LNAARLYATS LVERSVAGEE TRLARNVDAS LEAVEEILAA LLDISRLDAG ALKPDIAPFR
901 LDEIFQQLEL EFAPMAKEKG LELTFVPSAA AVRSDRRLLR RLLQNLVSNA IKYTHKGRVL
961 IGVRPRRGKL RVQVLDTGVG VPPGKQKLIF KEFQRLDEGA KAARGLGLGL SIVERIARVL
1021 DHPISLSSTS GKGSVFTVEL PAAPAMPARG QPSPRPAAPV ATLQGLSVLC IDNDPAILDG
1081 METLLTGWGC EVLKAPGLTE ALAMLREHRA PPDVLLIDYH LDKGDGIDAA KQLRWKLGHS
1141 LPAVLITADR SKRVRDTARA TEMEVLNKPV RPAALRALLA ACRATRAAAE
//