LOCUS ADH87405.1 568 aa PRT BCT 28-JAN-2014 DEFINITION Ancylobacter novellus DSM 506 ATP dependent DNA ligase protein. ACCESSION CP002026-68 PROTEIN_ID ADH87405.1 SOURCE Ancylobacter novellus DSM 506 ORGANISM Ancylobacter novellus DSM 506 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Ancylobacter. REFERENCE 1 (bases 1 to 4765023) AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A., Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C., Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M., Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and Woyke,T. TITLE Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)) JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012) PUBMED 23450099 REFERENCE 2 (bases 1 to 4765023) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Beatson,S., Kappler,U. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4084204 Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au) Organism available from DSMZ: DSM 506 Contacts: Ulrike Kappler (u.kappler@uq.edu.au) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Starkeya novella DSM 506 Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443, NBRC 12443, NCIB 9113 GOLD Stamp ID :: Gi02557 Greengenes ID :: 4661 Funding Program :: DOE-CSP 2008 Sequencing Depth :: 21x Isolation Site :: Soil Temperature Range :: Mesophile Temperature Optimum :: 26 - 30C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Energy Source :: Chemolithotroph, Heterotroph ##Metadata-END## FEATURES Qualifiers source /organism="Ancylobacter novellus DSM 506" /mol_type="genomic DNA" /strain="DSM 506" /isolation_source="soil" /type_material="type strain of Thiobacillus novellus" /db_xref="taxon:639283" protein /locus_tag="Snov_0068" /inference="protein motif:PFAM:PF01068" /note="PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: azc:AZC_0393 putative ATP dependent DNA ligase" /transl_table=11 /db_xref="InterPro:IPR012309" /db_xref="InterPro:IPR012310" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR016059" BEGIN 1 MNRFAALLDR LAYEPRRNGK IRLIADYFAH TPNPERGWAL AALTGALSFR NAKPGLIRQL 61 ISERTDPVLF ALSYDYVGDL SETVALMWPA PHGLNDTEPP ALSAIVHAFT HMGKAELPSV 121 LASLLDRLDE TGRWALLKLI TGGLRIGVSA RLAKTAVAAL GERTPDEIEL VWPGLEPPYE 181 ALFAWAEGRG ERPETDDPAP FRPVMLSHPL EDTDFESLDP AQFRAEWKWD GIRIQAVRGA 241 GADGRHVTRL YSRTGEDISS AFPDLAEALA FDGAVDGELL ILREGRVQSF NVLQQRLNRK 301 VVSPKLILEF PAHIRAYDLL FEAGEDLRDL PFEARRARLE ALIAAHPQDG RLDLSPIVPF 361 ESWDDLASAR ADPAAHGAGD DAEAVEGVML KRVDSFYVPG RPKGPWWKWK RDPHSVDAVL 421 MYAQRGHGKR SSFYSDYTFG VWTGEKSGEG ELVPVGKAYF GFTDAELMEI DRFVRRNTVN 481 RFGPVREVVH TPTEGLVLEV AFEGLARSTR HRSGLAMRFP RIARLRWDKP PGEADRLETL 541 ERMIGDEGRA PRQPSAVIGK APSSAEGA //