LOCUS ADH87384.1 932 aa PRT BCT 28-JAN-2014
DEFINITION Ancylobacter novellus DSM 506 UTP-GlnB uridylyltransferase,
GlnD protein.
ACCESSION CP002026-47
PROTEIN_ID ADH87384.1
SOURCE Ancylobacter novellus DSM 506
ORGANISM Ancylobacter novellus DSM 506
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Xanthobacteraceae; Ancylobacter.
REFERENCE 1 (bases 1 to 4765023)
AUTHORS Kappler,U., Davenport,K., Beatson,S., Lucas,S., Lapidus,A.,
Copeland,A., Berry,K.W., Glavina Del Rio,T., Hammon,N., Dalin,E.,
Tice,H., Pitluck,S., Richardson,P., Bruce,D., Goodwin,L.A., Han,C.,
Tapia,R., Detter,J.C., Chang,Y.J., Jeffries,C.D., Land,M.,
Hauser,L., Kyrpides,N.C., Goker,M., Ivanova,N., Klenk,H.P. and
Woyke,T.
TITLE Complete genome sequence of the facultatively chemolithoautotrophic
and methylotrophic alpha Proteobacterium Starkeya novella type
strain (ATCC 8093(T))
JOURNAL Stand Genomic Sci 7 (1), 44-58 (2012)
PUBMED 23450099
REFERENCE 2 (bases 1 to 4765023)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D.,
Goodwin,L., Pitluck,S., Davenport,K., Brettin,T., Detter,J.C.,
Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.,
Beatson,S., Kappler,U. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4084204
Source DNA available from Ulrike Kappler (u.kappler@uq.edu.au)
Organism available from DSMZ: DSM 506
Contacts: Ulrike Kappler (u.kappler@uq.edu.au)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Starkeya novella DSM 506
Culture Collection ID :: DSM 506, ATCC 8093, CCM 1077, IFO 12443,
NBRC 12443, NCIB 9113
GOLD Stamp ID :: Gi02557
Greengenes ID :: 4661
Funding Program :: DOE-CSP 2008
Sequencing Depth :: 21x
Isolation Site :: Soil
Temperature Range :: Mesophile
Temperature Optimum :: 26 - 30C
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Energy Source :: Chemolithotroph, Heterotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Ancylobacter novellus DSM 506"
/mol_type="genomic DNA"
/strain="DSM 506"
/isolation_source="soil"
/type_material="type strain of Thiobacillus novellus"
/db_xref="taxon:639283"
protein /locus_tag="Snov_0047"
/EC_number="2.7.7.59"
/inference="protein motif:TFAM:TIGR01693"
/note="SMART: metal-dependent phosphohydrolase HD region;
TIGRFAM: protein-P-II uridylyltransferase; KEGG:
azc:AZC_0338 PII uridylyl-transferase; PFAM: GlnD
PII-uridylyltransferase; DNA polymerase beta domain
protein region; metal-dependent phosphohydrolase HD sub
domain; amino acid-binding ACT domain protein"
/transl_table=11
/db_xref="InterPro:IPR002912"
/db_xref="InterPro:IPR002934"
/db_xref="InterPro:IPR003607"
/db_xref="InterPro:IPR006674"
/db_xref="InterPro:IPR010043"
/db_xref="InterPro:IPR013546"
BEGIN
1 MTDTRRRRRT DHPFKELFDI DVLREELTAL ARQVLDNGKA GREIELRGQM ARRLKLAYQQ
61 GHKTAERWLM EEGSGRRCAE RLSRLQDEII ALVHELAVKF LYPSDNPSTA ERMAIVAVGG
121 YGRGLMAPGS DTDILFLLPY KQTAWGESVA EAILYVLWDM GLKVGHATRS VDECIRQARA
181 DMTIRTALLE ARLLLGEKSL FEELTVRFDK EVVQGTAVEF VAAKLAERED RLKRAGQSRY
241 VVEPNVKDGK GGLRDLHTLF WIAKYVYRVH ETRDLVAKGV FTPEEAVVFR RCEDFLWSVR
301 CHLHFLAGKA EERLSFDLQR EMAERLGYTA HPGLKDVERF MKHYFLVAKD VGDLTAIVSA
361 ALEERHDKPV PRLNRVIARL RRSPRRALKE STDFIVDNDR INVADASAFG RDPVNLIRIF
421 HLAGKHGLAF HPDAMRLATR SLKLIDQRVR ENPEANKLFL EILCSRETPE IVLRRMNETG
481 VLGRFIPEFG RVVAMMQFNM YHSYTVDEHL IRAIGVLGQI ERGDRPDLGL ANELVQQIKN
541 RTLLYVAVFL HDIAKGRPED HSIAGARVAR KLCPRFGLSP VDTDTVAWLI EQHLTMSTIA
601 QSRDLSDRKT IENFASVVQN LERMKLLLIL TTADIRAVGP GVWNNWKSQL LRTLYYETEP
661 VITGGFSESN RNQRVARAQA EFRAAMADWP PEEIEAYLSR HYQTYWLQTD REQQAEHARF
721 IRAAEAEGRA LATTAHTDAA RGVTELTVFA PDHPKLLAVI AGACASAGAH IVDAQISTTT
781 DGRALDTISL TRAFEQDSDE LRRTERIAAA IQKSLAGEIR LPEIVAKRIP KRPRAFTVEP
841 EVTLNNSWSN RHTVVEVSGL DRPGLLYGLT QTLSRLNLNI ASAHIATFGE RAVDVFYVTD
901 LMGAKIIGAA RHSAIRRALL QVLDADDEAN AA
//