LOCUS ADG90106.1 834 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 ATPase AAA-2 domain protein
protein.
ACCESSION CP001874-3369
PROTEIN_ID ADG90106.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_3416"
/inference="protein motif:PFAM:PF07724"
/note="PFAM: ATPase AAA-2 domain protein; AAA ATPase
central domain protein; UvrB/UvrC protein; ATPase
associated with various cellular activities AAA_5; Clp
domain protein; SMART: AAA ATPase; KEGG: bsu:BSU00860
class III stress response- related ATPase"
/transl_table=11
/db_xref="InterPro:IPR001270"
/db_xref="InterPro:IPR001943"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004176"
/db_xref="InterPro:IPR011704"
/db_xref="InterPro:IPR013093"
BEGIN
1 MFERFTDRAR RVVVLAQEEA RMLNHNYIGT EHILLGLIHE GEGVAAKALE SLGISLEGVR
61 QQVEEIIGQG QSAPSGHIPF TPRAKKVLEL SLREALQLGH NYIGTEHILL GLIREGEGVA
121 AQVLVKLGAD LNRVRQQVIQ LLHGYQGKEP AAAGATQEST PSTSLVLDQF GRNLTQAARE
181 GKLDPVIGRE KEIERVMQVL SRRTKNNPVL VGEPGVGKTA VVEGLAQKIV KGEVPETLKD
241 KQLYTLDLGA LVAGSRYRGD FEERLRKVLK EIRTRGDIIL FIDELHTLVG AGAAEGAIDA
301 ASILKPMLAR GELQTIGATT LDEYRKHLEK DAALERRFQP IQVAEPSIAH TIEILKGLRD
361 RYEAHHRVSI TDGALVAAAT LADRYISDRY LPDKAIDLID EAGSRMRIRR MTAPPDLREY
421 DEQIAKIRRE KESAIDAQDF ERAAALRDQE KQLQLKRERR EKEWKAGDMD HVAEVTEELI
481 AEVLATATGI PVFKLTEEES QRLLRMEEEL HKRIIGQDDA IKALSRAIRR TRAGLKDPRR
541 PGGSFIFAGP SGVGKTELSK ALAEFLFGDE DALIMLDMSE YMEKHTVSRL FGSPPGYVGY
601 EEGGQLTEKV RRKPFSVVLF DEIEKAHPDI FNSLLQILED GRLTDAQGRV VDFKNTVIIM
661 TTNLGTRDIS KGIGVGFAKS DDTETTYDRM KAKVQEELKQ HFRPEFLNRV DDIVVFHQLT
721 QKEIIQIVDL MIARVDERLK DRDMGLVLTD AAKKLLAERG YDPVMGARPL RRTIQREIED
781 TLSEKILYGE LRPGHIVKVD VEGEGENAKF VFTGEPKPPE VLDSAASIAA SVQR
//