LOCUS ADG89797.1 1034 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 transcriptional regulator,
winged helix family protein.
ACCESSION CP001874-3060
PROTEIN_ID ADG89797.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_3102"
/inference="protein motif:PFAM:PF00486"
/note="PFAM: transcriptional regulator domain protein;
transcriptional activator domain; Tetratricopeptide TPR_4;
ATPase; SMART: AAA ATPase; KEGG: afw:Anae109_3667
ATPase-like protein"
/transl_table=11
/db_xref="InterPro:IPR001867"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR005158"
/db_xref="InterPro:IPR011579"
/db_xref="InterPro:IPR011717"
BEGIN
1 MPIDLRLLGD ARWQDRPLVG ARVQALLAAL VLAGRTVSAE RLIAEVWGVD EPANPVKALQ
61 VLVSRARSIV GAQTLTTEDG GYRLRVPPDR IDADRLHALA GRAEALLAVD PAAAAAVAQE
121 ALALGAGALP PEGEGPLAEL RRRAADDLAA ARVVLARARS RTGDHAAALA ELDEAVRARP
181 DDEGLLADLL RSEAAVRGVG AALDRFARYR SGLRDRVGAD VGPELRRVHH ELLALDRPVR
241 SGVRFDPTPL LGRDDDLRRV RSLLATSRVV SITGPGGIGK TRLAHAVARE APQPVVHFVE
301 LVGVTAAEDL LGEIGSALGV RDSVAGRRRL SPRQLADVRA RIARQLDLAP ALLVLDNCEH
361 LVEAVADLVA YLIATTRDLR VLTTSRAPLA IAAERVYPLP QLGMADAVAL FRDRATAARP
421 GVRLDEDDVR AVVGRLDGLP LAIELAAAKV RVMSPAEIAR RLDDRFALLR GGDRSAHARH
481 QTLLAVIDWS WNLLGERERR ALRRLAAFPD GFILEAAEQV LGGDALGAVE ELVAQSLLTV
541 VETADGVRYR MLETVREFGR MRLDAAGETA EARAAVRAWA VAYADRHGAR LHSPEQADAV
601 DRLRAEETNL SDILREALDE PDPEAVVVLF STLAGYWAIR GDYLRGHTLT AAVSAALDGW
661 TPPPRLLDRT RVTLAVALFH AVFFSPDHAR ALASMLSGLG ADSENPNVRA MTTVVLALMS
721 DPDSGFAALA GDPDPFVRQI ALHLMSHGLE NSGDPAGAIE TAQAALELTG EEDGPWQRAM
781 LHTLLAQLHA QFGDRAAVSR HAAAALPVLE RLGAVDDAVQ LRATVAMAAL AEGNRDEAAR
841 IIAELTEPGA EDGFGLSAGI CRAQLALADG DIAEGLRRHR EIAEALRSRH APGAPDAFAP
901 WAMYGEAVAV AAFAQYGEGD DGADLFESLR AKVADLFAVD RTFLDFPVTG MVLAALGIWG
961 LLKGALPAED AVRLLVLADR FAYNRITPVL HWPVLTAHAE RVAPGLLARI EAEYGDRRGP
1021 GLLAEVRAVV ARVA
//