LOCUS ADG89777.1 551 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 hydro-lyase, Fe-S type,
tartrate/fumarate subfamily, beta subunit protein.
ACCESSION CP001874-3040
PROTEIN_ID ADG89777.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_3082"
/inference="protein motif:TFAM:TIGR00723"
/note="TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate
subfamily, beta subunit; hydro-lyase, Fe-S type,
tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S
type hydro-lyase tartrate/fumarate alpha region; Fe-S type
hydro-lyase tartrate/fumarate beta region; KEGG:
mxa:MXAN_3162 fumarate hydratase, class I"
/transl_table=11
/db_xref="InterPro:IPR000362"
/db_xref="InterPro:IPR004646"
/db_xref="InterPro:IPR004647"
BEGIN
1 MPEFEYTDLL PLGPDETEYR QITADGVRVV EAAGRTFLEV EPEALRLLTE TAFHDISHFL
61 RASHLAQLRK IIDDPEASPN DRFVALDLLK NACIAAGGVL PMCQDTGTAI VMGKRGRHVL
121 TDGRDAEHIS RGVYDAYTKF NLRYSQMAPL TMWEEKNTGN NLPAQIELYA EDPWGRPDEY
181 KFLFMAKGGG SANKSLLFQE TKAILNEKRL LAFLEEKIRS LGTAACPPYH LAIVVGGTSA
241 EYALKVAKYA SARYLDTLPT AGSPLGHGFR DLELEEKILK ISQDLGIGAQ FGGKYFCHDV
301 RVIRLPRHGA SCPIAIAVSC SADRQAVAKI TRDGVFIEQL EMDPARFLPD TTEDELSDNV
361 VKIDLNRPMS EIRAELSKYP VKTRLSLTGP LVVARDIAHA KIAERLDRGE PMPQYLKDHP
421 VYYAGPAKTP EGYASGSFGP TTAGRMDSYV ERFQAAGGSL VMLAKGNRSR QVTEACKKYG
481 GFYLGSIGGP AARLAQDCIK KVEVLEYPEL GMEAVWKIEV VDFPAFIVVD DKGNDFFQDT
541 SGPVLTIGRR N
//