LOCUS ADG89671.1 1128 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 UvrD/REP helicase protein.
ACCESSION CP001874-2934
PROTEIN_ID ADG89671.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_2973"
/inference="protein motif:PFAM:PF00580"
/note="PFAM: UvrD/REP helicase; KEGG: mpt:Mpe_A0128
putative ATP-dependent DNA helicase rep protein"
/transl_table=11
/db_xref="InterPro:IPR000212"
/db_xref="InterPro:IPR014016"
/db_xref="InterPro:IPR014017"
BEGIN
1 MLTVRAPQKP ILSPEEIAAK LGIPAPTPEQ AEVIAAPLEP MVVVAGAGSG KSETMAGRVV
61 WLVANGFVRP DQVLGLTFTN KAAAELAERV RKRLGQLAAS GLIPPELLDH EPAVSTYHAY
121 AARLFTDHAL RDGLEPAMRL ATPAVAWQLA AQVVGQYDGP MDKVDLTPPS VTAAVLELAG
181 ELAEHLCEPD DVRGFGRWLR DRFAELPGKP IAAQRKVIER QEVREQLLPL VEAYQRLKRE
241 RGLLDHGDQV ALAARIALRH PEVGAVERGR YAVVLLDEYQ DTSHAQLELL RALYGGGHPV
301 TAVGDPCQSI YGWRGASAGN LLRFPGHFPT RTGEPAPVKC LSVSFRNGER VLGVAARIQE
361 PLRAEAREVP VLTPGPNRRG RGRVVCAFHR TAEEEAEWIA GLVDGLLRGE GAAAAGSSLG
421 VAVPREGAPD GLPWPEGERD PDRPAVSPKD IAILVRKRSQ FAALRRALED RGIPVEVVGL
481 GGLLMVPEVA DIVATLRALY DPTAGDALLR LLAGPRWRIG PADLKTLGDL ARELTKELRE
541 GRREGDPLEN AVAELAEEQG NLIDALDELP DRPDWLARFS PRARERLPAL ALELRALRAH
601 AGRPLPELIG EVERRLRLDI EVAAKGGNPL AARADLDAFL DIAARFAGES EDGTLGAFLA
661 YLKAAETEEF GLKTAEAGQV GETDTVKLMT VHMAKGLEWP VVIVPGLSQA TTQKGWVTKG
721 SLFPAAPVTN PRWTENPRKL PYPLRGDRTD LPRLPSLERD ALTAFEEDCR TRDLLEERRL
781 AYVAVTRAHY LLVASGFRWG TSSRPLEPSM FLEEIRAKGA EVARWWDGDE EENPLLADPP
841 RADWPQVGVP DPVREGARLV EEALAARAEQ DAAGAERDAA EAERDTAGAV FADPVGDLSP
901 EDRERMRAWA RDTELLLRER AEHHHRAGQV VELPDRLTVS SLVTLAADPV AFAQSVRRPL
961 PRKPAPHARR GTAFHRWLET RWGQQRLLDE SDLPGAADEQ SGDADLAELQ ELFERSEWAR
1021 RTPVDQEVPF QMVIGDRLVR GRMDAVFREG DGYVVVDWRT GRRPQGEEAE AAAVQLAAYR
1081 LAWSALAGVP LEKVSAAFHY VRYNETHRPV DLLDAAGLTA LIERIPAE
//