LOCUS ADG89429.1 1722 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 DEAD/DEAH box helicase
domain protein protein.
ACCESSION CP001874-2692
PROTEIN_ID ADG89429.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_2729"
/inference="protein motif:PFAM:PF00270"
/note="PFAM: DEAD/DEAH box helicase domain protein;
helicase domain protein; SMART: DEAD-like helicase;
helicase domain protein; KEGG: mgm:Mmc1_2015 DEAD/DEAH box
helicase domain protein"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR007087"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MDVFRVHERL IADYDAFTTS LVHVRDKRIA EHLAEERQAK VRWPDPWVSL NPSFAPGGTI
61 TELVQEGLLH PTCDRLFRIK TDWNDPGSRP IALHRHQREA VEAARDGGSY VLTTGTGSGK
121 SLSYILPIVD SVLRDPAPGR VKAIVVYPMN ALANSQLHEL RRFLEWGLAK HERPVTFDRY
181 TGQESQEERD RILARKPDIL LTNYVMLEYL LTRPRERDHL IAAAQGLRFL VLDELHTYRG
241 RQGADVALLV RRLRDACNAP NLQCVGTSAT MATTRTFAEA QQVVAEVASR LFGTTVTADR
301 VIGETLVRAT ADKDPTPAEL TAAMAKAGSG RSYLELAEDP LACWIESEFG LTAEPRTGRL
361 VRKRPTKVAD AAERLHQATG RPAEECREAI EKVLQEGAQA EHPETRRPLF AFRLHQFLSK
421 GDTTYVSLEP EDRRYITSQY QVSVPRERNK ILLPLAFCRE CGQEYAVVTR GKDGRYGPRQ
481 EADASGGDAV NGYLYISSTH PWPADPVAEG RLPDSWLEPT ADGGVQVRPS LADRLPKEVW
541 LSPEGREVPP GEGLRTWYIP SPFRFCLRCR VSYEQSRGKD IAKLATFASE GRSSAVSIIS
601 TSILRSLREE RDHGRLGKEA CKLLTFVDNR QDASLQAGHL NDFVQVAQVR AALYRAAKAA
661 GEDGLRHDEL AQRVAKAMNL PLTAIAQNPE VKFGQRDAVL RAFRGVLAYL IYLDLERGWR
721 ITMPNLEQTG LLRFDYVALG EIAADTEHWA GTHPALRDAD PELREELARI VLDEMRRALA
781 VDVDVLTPEG YERIYKQSTQ HLTEAWALPE SGRDTARIVF ARTNRPGQSR DWINFNGRTL
841 LGNYLRRHNT FPHLGRRLTV EEADRVIADL LGALEKYGLL TVVEESPDGA MGYRLKSSEL
901 IWLAGDGETG ATDPLRKTVD PEVGTRVNRY FRDLYLRIAE EFAGIRAAEH TAQVRAEDRQ
961 EREQRFRDGE LPLLYCSPTM ELGVDIATLA TVAMRNVPPT PANYAQRSGR AGRSGQPALI
1021 TTYCSTGNAH DQYYFRRSDL MVAGSVQPPR LDLTNEDLIR SHVHAIWLAE TRADLHSRMT
1081 DVIDVSRPGL PLHEHLRLQL ADEGARRRAV QRAKEVLATL LEREGLERSA WWYDGWIEDT
1141 VRAAAERFDA ACDRWRDLYR AALAEQEEQN RRVLDHATTP QARKAAQRRR EHAENQLRLL
1201 KNEDGEGQFS DFYTYRYFAS EGFLPGYSFP RLPLAAYIPG TRLGGTYVQR PRFIAINEFG
1261 PGALIYHEGQ RYQVVSIQVP TGESGEVATT EARICASCGY WHDREAGVDR CVECDAELGG
1321 SLAGLMHLQT VHTVRRQRIS SDEEERRRAG FELQTTYRFS THGARSGRLQ AEVRRGDEPL
1381 ATLVYGDTAT VRVINLGRRG RRNRNDIGFW LDPVRGQWLS ESKAADRTPE DDGLSSTEDV
1441 QRSIKVVPFV EDRKNICVIR LADPVDEQVA TTLRYALERG IEAEFQLEDA ELTSEALPDP
1501 ADRGRMLFIE SAEGGAGVLR RLHDEPDALA RVARRALEII HFDPDTGEDR GHAPGARERC
1561 ERGCYDCLLS YTNQPWHAAI DRHKVVDLLR ALASSTTVPA GGAHRTAEEH AASLLGAAES
1621 GLERDFVEFL RAGGYRLPDG AQEFISEARA RPDFVYRTKG GNIAIFVDGP HHDAPHVSER
1681 DMEAEDRLME LGWLVIRFRY DDEWDEIVRK YPSVFGTGRS GR
//