LOCUS ADG89218.1 650 aa PRT BCT 11-DEC-2013 DEFINITION Thermobispora bispora DSM 43833 transcriptional regulator, CdaR protein. ACCESSION CP001874-2481 PROTEIN_ID ADG89218.1 SOURCE Thermobispora bispora DSM 43833 ORGANISM Thermobispora bispora DSM 43833 Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Thermobispora. REFERENCE 1 (bases 1 to 4189976) AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A., Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and Kyrpides,N.C. TITLE Complete genome sequence of Thermobispora bispora type strain (R51) JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010) PUBMED 21304716 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4189976) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Thermobispora bispora DSM 43833 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4189976) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082801 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Thermobispora bispora R51, DSM 43833 Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO 14880, NBRC 14880 GOLD Stamp ID :: Gi02237 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Decaying manure Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 55 - 65C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None ##Metadata-END## FEATURES Qualifiers source /organism="Thermobispora bispora DSM 43833" /mol_type="genomic DNA" /strain="DSM 43833" /isolation_source="decaying manure" /type_material="type strain of Thermobispora bispora" /db_xref="taxon:469371" /note="type strain of Thermobispora bispora" protein /locus_tag="Tbis_2516" /inference="protein motif:PFAM:PF01590" /note="PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: mpt:Mpe_B0536 CdaR family transcriptional regulator" /transl_table=11 /db_xref="InterPro:IPR003018" BEGIN 1 MHVPAPIVAV PWQGETEPCG EGQRDAAWRP RPAHWNEVLE VFKEVAVHAT TSADLNEILT 61 VIGSRLCHLL GVKRCSVYLR RDDGKFQGAA GWSATEGDIG DKIRILVSGI EGDRFTQDIV 121 ESRSAVLVVN AQQDPRTIHK TMVRWRVRDM LGVPLVVAGE VIGIIYVDNE QDPHVYDPVQ 181 IEVAELFGSL AALVVQQAVL HNRLRAQAIQ LTRQKRTLEH LTNVHEQLVR AVLEGADLNR 241 AVQMLSGLLN RPVVLYNPRF DVMAWAAPPG MAMQSAPVIP ERVLKMPSVA AVINELNADR 301 PSAIIPPTLA VGLGSRHLLC VLMTEGRPAG YLGVVEIGRA ITDLDTKIAE QGAVVMALQV 361 LSERRQIEAE GQAREDFLSD LLRGTRDEEQ LMRRAPQFGI DLRSPYVLVR FCYADGQPAT 421 PRTARRAVLA RALGRGLGMP EPPVIGVPGS DIALVRLTGG SEPAALRRVR RRLEALLREL 481 SAKFKIEKVL VSSVCRRVGD FPLAHREIRE LEELTTAFNW SRGLLFADDL GLFRLIVNSN 541 RLKEAVRFAT DFVRPLARYD ESTGGQLVET LRAYVQAEGQ VRGAAELLGV HENTIRYRLA 601 KMREMGSLDP HRMDMLLTAR LAFQILDFAS GGPLGQASGP AVPAAGSQVV //