LOCUS ADG89198.1 1196 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 cobaltochelatase, CobN
subunit protein.
ACCESSION CP001874-2461
PROTEIN_ID ADG89198.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_2495"
/EC_number="6.6.1.2"
/inference="protein motif:TFAM:TIGR02257"
/note="KEGG: bac:BamMC406_1576 cobaltochelatase, CobN
subunit; TIGRFAM: cobaltochelatase, CobN subunit; PFAM:
CobN/magnesium chelatase"
/transl_table=11
/db_xref="InterPro:IPR003672"
/db_xref="InterPro:IPR011953"
BEGIN
1 MPVVLLLSTS DTDLLSARAS GKPYRLGNPA RLSVDDLPDL LDGTDLVVVR LLGGRRAWEE
61 GLDALLAGPR PVVVLGGEQV PDAELMELST VSGGVCAEAH AYLAYGGPAN LAELHAFLCD
121 TLLLTGYGFA PPQPTPAWGV LEREARDVDG PVVGVLYYRA HHVAGNTAFV EALCRAIEEA
181 GGRPLPVYCS SLRAAEPGLI EALRAADVLV VTVLAAGGTR PALAGAGGDD EAWDVGALAE
241 LNVPILQALC LTTSRRAWEE SDDGLSPLDA AAQVAIPEFD GRIITVPFSF KEFDADGLPR
301 YVPDPERAAR VAGIAVRHGL LRRTPPAERR VVVMLSAYPT KHARLGNAVG LDTPASAVRL
361 LAALAAAGYD LGDGLPGVAE QDGDALMHAL IAAGGQDPDW LTEEHLAGNP VRISGAAYAR
421 WFATLPADLR EAVERHWGPP PGELFVHEGD IVLAALRAGN VVVMVQPPRG FGENPIAIYH
481 DPELPPSHHY LAAYRWIADE FGAHAIVHLG KHGNLEWLPG KSAALSASCA PDAALGDLPL
541 IYPFLVNDPG EGTQAKRRAH AVLVDHLVPP MARAETYGDI ARLEQLLDEH ATVAALDPAK
601 LPAVRAQIWT LIRAARLDHD LGVADRPHDA EFDEFLLQVD GWLCEVKDAQ IRDGLHVLGR
661 APEGADRVNL VLAILRARQM WAGRRALPGL REALGLAEDG TAGRAEVDAA EATARALVEA
721 MEERGWDAAA APQVAAALLP DADADRRETV ARILAFAATE VVPRLRRTTD EIDNVLHALD
781 GGYVPAGPSG SPLRGLVNVL PTGRNFYAVD PRAVPSRLAW ETGQAMARSL LERYRAEHGT
841 WPRSVGLSMW GTSAMRTAGD DVAEVLALLG VRPEWDEASR RVIGLEPIPL AELGRPRIDV
901 TMRISGFFRD AFPHVVAMLD DAVRLVAELD EPDEDNYVRA HVRADDRGDR RRATLRIFGP
961 APGAYGAGLL PLIDSRNWRD DADLAEVYAV WGGHAYGRDL DGVPARADME NAYRRIAVAV
1021 KNVDVREHDI ADSDDYFQYH GGMVAAVRAL TGRSPAAYLG DTTRPDAVRT RTLAEETARI
1081 FRARVVNPRW LAAMRAHGYK GAFELAATVD YLFGYDATTG VVADWMYDRI AAAYVLDPEN
1141 RAFLAKSNPW ALHGIAERLL EAAERGMWAN PDAGILEGVR RVYLETEGDL EDATGR
//