LOCUS ADG89066.1 917 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 2-oxo-acid dehydrogenase
E1 subunit, homodimeric type protein.
ACCESSION CP001874-2329
PROTEIN_ID ADG89066.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_2360"
/inference="protein motif:TFAM:TIGR00759"
/note="TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit,
homodimeric type; KEGG: tgr:Tgr7_2456 pyruvate
dehydrogenase (acetyl- transferring)"
/transl_table=11
/db_xref="InterPro:IPR004660"
BEGIN
1 MASGRQRFSI ISDGLPSQLP DVDPSETQEW LESLDTVIKT EGKTRARYLM LRLLERARES
61 QVGVPGLRST DYINTIPPER EPWFPGDEYI ERRIRAYIRW NAAVMVTRAN YRTNVGGHIA
121 TYASAASLYE VGFNHFFRGK DHGESGDQVF IQGHAAPGIY ARAFLEGRLT EAQLDAFRQE
181 LSQGVRGLPS YPHPRLMPDF WEFPTVSMGL GAIAAIYQAR FNRYLLNRKI KDTSRSHVWC
241 FLGDGEMDEP EAIGAIGLAA REELDNLTFV INCNLQRLDG PVRGNGKIIQ ELEAFFRGAG
301 WNVIKVIWGR EWDPLLAADV DGVLVNQLNI TPDGQFQTYA VESGAYIREH FFGADPRLRK
361 MVEHLSDDEL RKLSRGGHDY RKVYAAFKAA REHVGQPTVI LAQTIKGWTL GKDFEARNAT
421 HQMKKLTKEE LKEFRDRLYL PIPDKALEED LPPYYHPGED SEEIQYMKER RAALGGYLPK
481 RVVRAKPLKL PGDPVYSQLR KGSGKQNVAT TMAFVRLLKD LCKDKEIGYR FVPIIPDEAR
541 TFGVDSMFPT QKIYSPHGQT YEPVDRNLLL SYRESTEGQI LHEGITEAGS MASVIAAGTS
601 YATHGEHMIP VYIFYSMFGF QRTGDQMWQL ADQMGRGFLI GATAGRTTLN GEGLQHQDGH
661 SLLLASANPA CVAYDPAWAY EIAHIVRDGL RRMYGENPED VFYYMTTYNE PYPQPPEPEN
721 VDVEGILKGL YLYAPGSGTG PKANILASGV AMQWALEAQR LLAQDWGVSA SVWSATSWSE
781 LRRDALAAEE HNLLNPDAEP RVPYVTAKLS GSSGPFLGVS DYMRAVPDQI ARWVPGDWTS
841 LGTDGFGLSD TRSALRRHFH VDAASITLAV LTQLVKRGEL KPEVLREAVV RYHLKDGVTE
901 MAAQSTPETN DTQSMGV
//