LOCUS ADG89040.1 1315 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 ATP-dependent helicase
HrpA protein.
ACCESSION CP001874-2303
PROTEIN_ID ADG89040.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_2330"
/inference="protein motif:TFAM:TIGR01967"
/note="KEGG: hrpA; ATP-dependent RNA helicase HrpA; K03578
ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent
helicase HrpA; PFAM: helicase-associated domain protein;
protein of unknown function DUF1605; helicase domain
protein; SMART: DEAD-like helicase; helicase domain
protein; AAA ATPase"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR007502"
/db_xref="InterPro:IPR010222"
/db_xref="InterPro:IPR011709"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MDTLADLHSR LQDLMPRDRH RLRRRLNGVR KIRDGGARRA VIGEIAAELE AAQRRVEARR
61 AAVPPIVYPP ELPVVQRKDD LLAAVRDHQV VIVAGETGSG KTTQLPKICL ELGRGVHGAI
121 GHTQPRRIAA RSVAARIAEE LGVPLGDAVG YKVRFTDRSS DGTLIKLMTD GILLAELQSD
181 PLLLQYDTII IDEAHERSLN IDFILGYLKR ILPRRPDLKV IITSATIDPE SFARHFRGPD
241 GEPAPIIEVS GRTYPVEVRY RPIGEDEDQT QAIVNAVDEL CAAGPGDILV FLSGEREIRD
301 TADALKGRPE EVLPLYARLS TAEQQRVFQP HRGRRIVLAT NVAETSLTVP GIRYVIDPGT
361 ARISRYSNRL KVQRLPIEPI SQASADQRKG RCGRTSDGIC IRLYSEEDFN SRPRFTDPEI
421 LRTNLASVIL QMAALKLGDV AEFPFVDPPD PRQIRDAYAL LHELGAIEQV PGAQQREVRL
481 TPIGRKLAQL PVDPRLGRMV LEAGRNGCAR EVIIIAAALS IQDPRERPAD NQQAADEKHR
541 RFADKESDFL TFLNLWRYLQ ERQRELSSSA FRRMCKAEYL NYLRVREWQD IVSQLTEVAT
601 SLGIVLNSAD ADPDRIHQSL LAGLLSHIGL KDLDTKRRQD GRRPITEYLG ARGARFAIFP
661 GSALAKAQPT WVMSAELVET SRLWGRINAK IKPEWVEPLA QHLVKRSYSE PHWDPEQAAV
721 IAFEKVTLYG VPIVTERKVN YGRIDPELSR ELFIRHALVE GDWRTHHKFF HANRRLLQEV
781 ERLEEKARRR DILVDDETLF DFYDRRIPAE VVSGRHFDAW WKKASKENPD LLTFTPEMLI
841 NEGAGVREED YPDTWRHNGH RMRLTYRFDP GAGLAEAVRR GGGHDRDRGA DGVTVHIPLS
901 VLNQVDPTGF EWQVPGLREE LITELIRSLP KDLRRNFVPA PDYAKKVLSR VRPGSEPLLD
961 ALERELYELT GVRVPRDAWN LERIPDHLRI TFRVVDERKR TLAESKDLTE LKRILAPRLR
1021 DTLSKAAEDL ERTGLRSWTI GTLPKVFQHG RMRAYPALVD ETDSVAVRMF ETEDEQRKAM
1081 WAGTRRLLML TTVNPAKSIL RGLTTEQKLT LSRSPHGSAV ALFDDCVACA VDALMAQAGG
1141 PAWDEEGFRR LHDHVRASLY ETAEEVVARV ERALAAWHEA CTALAAIERG GPADVVADVK
1201 GQLERLVYPG FVTDTGYDRL PHLARYLRAV TRRLGKLGED PFRDGERMRQ VQEVEDAYDE
1261 LLDRLEPQHR DAPAVREIRW MIEELRVSLF AQQLGTPIPV SEKRIRKAME RIAVP
//