LOCUS ADG88877.1 1249 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 SMC domain protein protein.
ACCESSION CP001874-2140
PROTEIN_ID ADG88877.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_2166"
/inference="protein motif:PFAM:PF02463"
/note="PFAM: SMC domain protein; KEGG: ade:Adeh_0433
exonuclease SbcC"
/transl_table=11
/db_xref="InterPro:IPR003395"
BEGIN
1 MRLHLLRLTA FGSFPGTEEV DFDALSEAGL FLIHGPTGAG KTTVLDAVCF ALYGRVPGQR
61 DKARSLRCDH APPGRGPVVE LEVTIRDRRF RITRSPAWLR PKQRGTGLVE EKAKTRVEEL
121 TPAGWTARTT RSDEAGHLIG ELLGMNADQF CQVAMLPQGE FARFLRADGE ERRRLLERLF
181 SVRIYTEVER WLAERRTETG REQQEAWREV ESVIDRMRGA AGPELLAALP ETADPAGDPL
241 GWSAALLAAA AEAVAATGAE EQRSADALAS ARAALEAGRE VAERRRRYEA ALARRDELAL
301 AAEERSDLES MLDEAARADR VSPLIRLAEQ RAEAAAKARQ LAGDAIGRAG PLIGPAAGAA
361 DLERLERERR AEAARLEQLL PEEARLTAVR GDLAAARERL TELAAEEARL AERRAELPDE
421 LARAEERLAE SRLAAARIPG LAANRDAAAA ALAAVRRRDE LAAALAEARR AEADALAALP
481 EPAGPDPGRS LAELERARRD ELVKLEERAA EEARLAEITA RLAGLRREIA EAAEEEAAVR
541 ADLTGLPDEL KRAEERLARA RAAAARLPGL EAECRRAAER LAAAQDRDRL AAELAEAERA
601 RQAAVDRAQE ARDRFQEIRQ ARIEGMAGEL ARELTPGEPC PVCGSPDHPA PAAPADAAPT
661 AEDEQRAQDE FEAARRAREE AERRVASMRA RLDEVTRRAE GRGTAEAAAL LAAAEEAMAA
721 EREAAAAEPE LAAEATELAA RLDRLRATAE VLGRRLAEHR AQERDLAAEH ARLAARLAEA
781 LGEDRDVRAR RERLERELGL LTAAADAVAA ARAAEEAYRQ ARAAVPEGAE EEAARRALEE
841 ADKALESANT LAAEESALAE ERRRLAEELA TVEERARRLA IETAETRTRL ERLTEEEARL
901 TGLLDEHRGE DPSLAARLER ITAETALLRD AAEAVERARL AEQERERAAA EAEAAAAEAG
961 FRGVADAKAA IRTEAEREEM AERLRRFDAE QAAIEAELAD PELAAAAAGP APDLAALEQE
1021 HERAEREHAE RVSARDRARS RLDQLTDLAA ELEAAHRRYL PAAERHRLAR RMAELTGGTS
1081 PDNRYHMRLS SYVLGERLRQ VVDAANDRLD RMSGGRYLLE HDLGRVAGDR GRSGGGLALR
1141 VLDGWTGAAR DPATLSGGES FIASLALALG LADVVAAEAG GPEIGTLFVD EGFGTLDEET
1201 LDDVLDILDG LREGGRTVGI VSHVAELRLR IPARLQVVKG RSGSRLVHA
//