LOCUS ADG88819.1 832 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 DEAD/DEAH box helicase
domain protein protein.
ACCESSION CP001874-2082
PROTEIN_ID ADG88819.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_2108"
/inference="protein motif:PFAM:PF00270"
/note="PFAM: DEAD/DEAH box helicase domain protein;
helicase domain protein; SMART: DEAD-like helicase;
helicase domain protein; KEGG: scl:sce4364 putative
ATP-dependent helicase"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MSENQSLIQR LPRDPDPDSV FDAFVRWNAD RGITLYPAQE EALIEVVSGH NVIVATPTGS
61 GKSLVAAGAH FAALARDEVS FYTAPIKALV SEKFFDLCAL FGSENVGMMT GDASVNIDAP
121 IICCTAEILA QIALRDGADA DVGTVIMDEF HFYSEPDRGW AWQVPLLELP QAQFVLMSAT
181 LGDMSRFEKD LTRRTGRPTT VVKSAERPVP LVYSYRKTPL HETIEELLAN DQAPIYVVHF
241 TQAAAMERAQ ALTSINVCTK AEKEAIAKEI GNFRFTTRFG RTLSRLVRHG IGVHHAGMLP
301 KYRRLVERLA QAGLLKVICG TDTLGVGVNI PIRTVLFTAL SKFDGSRVRR LRAREFHQIA
361 GRAGRAGFDT VGYVVCQAPE YVIENERALA KIGDDPKKRR NFVRKKPPEG FVGWSEETFQ
421 KLQESEPEPL VSRFKVTNAM LLAVINRPGD CFQAMKRLLT DNHEDRKAQR RHISHAIAIY
481 RSLLAGGIVE TLPEPDEYGR RARLTVDLGE DFALNQALAT FAVSTFRLLD PESPTYALDI
541 VSVVESTLDD PRSILQAQLN KERADAVARM KAEGLDYEER MERLAEITYP MPLADLLFGA
601 YEEYRRGHPW VADHAVSPKS IVRDMYERAM TFTEYVQYYE IARSEGTLLR YLTDAYRTLS
661 RTVPTQYRND ELVDLIEWLG EMVRQVDSSL IDEWEKLANP EAAAQEEETE APARPVTGNP
721 RAFRVMVRNA MFRLVELAAL DKEEELTELH PEIDWGAALD AYYDEHDEIL TGPDARGPHL
781 LMIEEGKDVW RVRQIIDDPA GDHDWGISAE VDLAASDAEG QAVIRVTAFD RL
//