LOCUS ADG88566.1 1154 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 methionine synthase protein.
ACCESSION CP001874-1829
PROTEIN_ID ADG88566.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1854"
/EC_number="2.1.1.13"
/inference="protein motif:TFAM:TIGR02082"
/note="KEGG: gdi:GDI3502 putative methionine synthase;
TIGRFAM: methionine synthase; PFAM: homocysteine
S-methyltransferase; Methionine synthase B12-binding
module cap domain protein; cobalamin B12-binding domain
protein; dihydropteroate synthase DHPS; Vitamin B12
dependent methionine synthase activation region"
/transl_table=11
/db_xref="InterPro:IPR000489"
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR003726"
/db_xref="InterPro:IPR003759"
/db_xref="InterPro:IPR004223"
/db_xref="InterPro:IPR006158"
/db_xref="InterPro:IPR011822"
BEGIN
1 MTGRPSFREA LSERILVADG AMGTMLQSYH PTIEDFQGHE GCNDVLNVSR PDIVRSVHDA
61 YLAAGVDCIE TNTFNSNQAA LGEYGIADRI YELSEAGARL ARERADHWST PDHPRYVLGS
121 MGPGTKLPTL GHLPYALLRD AYEQNAAGLI AGGVDALIIE TCQDLLQAKA AIVGAKRAIA
181 KAGRDVPIIA QVTIETNGTM LLGTEIGAAL TSLEPLGIDL IGLNCATGPA EMSEHLRYLA
241 KHARVPLSCM PNAGLPELTA EGARYPLQPE ELAEAHVTFI REFGLSLVGG CCGTTPEHMR
301 TVVERVAGMT RSARRPRPEA GAASLYQHVP FRQDTSCLMI GERTNANGSK AFREAMLAGQ
361 YDECVEIARA QARDGAHMLD LCVDYVGRDG VADMKELAFR FATASTLPIV LDSTEPAVLE
421 AGLEMLGGRA VVNSVNFEDG DGPDSRFTKV MRLVKEHGAA VVALTIDEEG QARTAEWKVR
481 VATRLIEKLV NEWGMRPEDI LVDCLTFPIA TGQEDSRRDA LETIEAIREV KRRYPDVQTT
541 LGISNVSFGL NPAARVVLNS VFLNECVNAG LDSAIVHASK ILPMNRIPDE QRQVALDLIY
601 DRRREGYDPL QRFMELFADA DAASMTAGKA AELAALPLWE RLKRRIIDGE RKGLEDDLDE
661 ALTQRPALEI INDVLLDGMK TVGDLFGSGQ MQLPFVLQSA EVMKSAVAYL EPHMERVEGV
721 SKGRIVLATV KGDVHDIGKN LVDIILSNNG YEVINLGIKQ PISAIIQAAE EKQADVIGMS
781 GLLVKSTVVM KENLEELNAR KLAAKYPVIL GGAALTRAYV EQDLADIYEG EVRYARDAFE
841 GLRLMDAIMA VKRGEKGASL PPLRTRRVKP GAVLRRTPAD ELPRRSDVAT DNPIPRPPFY
901 GDRVVKGIPL ADYAAFIDER ALFMGQWGLR PSRAEGGPSY EELVETEGRP RLRMWLERLH
961 TENLLEAAVV YGYFPCVSEG DSLIILDEDG GERLRFTFPR QRRDRHLCLA DFFRPRESGE
1021 VDVVAFQVVT VGHRIGRATA ELFGKDAYRE YLELHGLSVQ LTEALAEYWH ARVRSELGIG
1081 GDESLEDMLK VNITGCRYSF GYPACPNLED QVHLMTLLDP ARIGVTLSEE YQLHPEQSTS
1141 ALIAHHPEAK YFKV
//