LOCUS ADG88343.1 748 aa PRT BCT 11-DEC-2013 DEFINITION Thermobispora bispora DSM 43833 protein-export membrane protein SecD protein. ACCESSION CP001874-1606 PROTEIN_ID ADG88343.1 SOURCE Thermobispora bispora DSM 43833 ORGANISM Thermobispora bispora DSM 43833 Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Thermobispora. REFERENCE 1 (bases 1 to 4189976) AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A., Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F., Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and Kyrpides,N.C. TITLE Complete genome sequence of Thermobispora bispora type strain (R51) JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010) PUBMED 21304716 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4189976) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Thermobispora bispora DSM 43833 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4189976) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082801 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Thermobispora bispora R51, DSM 43833 Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO 14880, NBRC 14880 GOLD Stamp ID :: Gi02237 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Decaying manure Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 55 - 65C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None ##Metadata-END## FEATURES Qualifiers source /organism="Thermobispora bispora DSM 43833" /mol_type="genomic DNA" /strain="DSM 43833" /isolation_source="decaying manure" /type_material="type strain of Thermobispora bispora" /db_xref="taxon:469371" /note="type strain of Thermobispora bispora" protein /locus_tag="Tbis_1629" /inference="protein motif:TFAM:TIGR01129" /note="TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: secD; protein-export membrane protein SecD; K03072 preprotein translocase SecD subunit; K03074 preprotein translocase SecF subunit" /transl_table=11 /db_xref="InterPro:IPR003335" /db_xref="InterPro:IPR005665" /db_xref="InterPro:IPR005791" BEGIN 1 MSRAPLWRAL VALAVIAASL AFALTMPPRL GLDLRGGTQL VFEAKDSPKV KADAEATDRA 61 LDILRRRADA LGVVEPTLVR SGERRIIVEL PGVLDPRKAA SVIGKTAQLT FHPVLGAADE 121 NDKDALADES GQKLRLGPAA ISGDAVTDAA ARTNPQMGPG WFVTIDFKES GPWKKLTGEA 181 ACNPVGDPKR RIAIVLDNEI ISSPQVDESV GCNVGITGGS TQITGSFTME EAQNLAVLIK 241 GGSLPVPLEL VEQRTVGPTL GAEAIEASAK AAVVGVILTT LFIVVIYRVV GLLAAIALAS 301 YALISYAGLV AIGATLTLPG LAGFVLAIGM AVDANVLVFE RAREEYRASP ERGLKWASQL 361 GFKNAWSAIA DSNITTLLAA ALLFWLASGP VKGFGVTLSI GVLASLISAM LITRVLVDLI 421 IRKVPVRASG LGSIGRVRTW LTTRNPNLMA RRRIWLGIAA VLLITAIAGP VARGFNFGVE 481 FTGGRIMEFA TQQPVDAEAA RQVVSDAGFP SAVVQRSQDA ISVRTGQISA DDVARIEEAL 541 DKRFGDVTKE RDELIGPSLG DELRRNAIIA LSLALAAQLA YLAYRFRWTF GTAAVLALFL 601 DCMVVIGLFA WLGKPIDGVF LAAMLTIVGY SVNDKVVLFD RVREEWPLRR KDVFDGVVNS 661 AILQTVPRTV NTGLGALFIL AALAVFGGDS LQDFAIALLV GITVGTLSSS FVAAPAAIEL 721 EKINKQPPPV PHRPKRTSRT REGTGAVL //