LOCUS ADG88332.1 1083 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 methylmalonyl-CoA mutase,
large subunit protein.
ACCESSION CP001874-1595
PROTEIN_ID ADG88332.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1618"
/EC_number="5.4.99.2"
/inference="protein motif:TFAM:TIGR00641"
/note="KEGG: rme:Rmet_0210 methylmalonyl-CoA mutase;
TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM:
methylmalonyl-CoA mutase; cobalamin B12- binding domain
protein; ArgK protein"
/transl_table=11
/db_xref="InterPro:IPR005129"
/db_xref="InterPro:IPR006098"
/db_xref="InterPro:IPR006099"
/db_xref="InterPro:IPR006158"
BEGIN
1 MSQPKSSATT GSLHVPVHPV RFVTAASLFD GHDAAITIMR RLLQSQGAEV VHLGHDRSVD
61 EVVTAALQED VCGVAVSSYQ GGHVEYFSYL VERLAERGAG HVKVYGGGGG VIVPHEIELL
121 AQRGVRIFSP QDGQRLGLPG MINVLIRECD VDLTAQKPDL NALLAGDEAA LARAITVLQA
181 GADERLAAAV RTAAQDRRVP VLGITGTGGS GKSSLTDELV RRLRRDSEDK VRVAIIAIDP
241 TRRRGGALLG DRIRMNSIAP GVVFYRSLAT RNPGSQLPDH LEDIIAACKA AGYDLVIVET
301 PGIGQADASI VPYVDVSLYV MTPEFGAPSQ LEKIDMLDLA DVVAINKFER RGAQDALRDV
361 ARQMVRNREL FGTPWQEMPV FGTSAARFND DGVTALYHHL KGLLREHGLP SFPGVLPTVP
421 GRTSTGLRAI LPPGRENYLS EIAETVRRYH ATTEEQVELV RRRQQLAAVR DMLAGEDERA
481 AAAVTELLEG VEKRIHADVR ELLDKWPATR AAYQGEEFVY TVRDKEIRTP LTRTTLSGTR
541 LPRVALPRYE DHGELLRFLR KENLPGYFPF TAGVFPFKRT EEAPTRMFAG EGDPFRTNRR
601 FHMLSAGQPA ARLSTAFDSV TLYGRDPDRR PDIYGKIGTS GVSIATIDDM RELYAGFDLC
661 APNTSVSMTI NGPAPAILAM FFNVAIDQQI EKFTAEHGRP PTDEERERIR AWTLSTVRGT
721 VQADILKEDQ GQNTCIFSTE FALRCMADVQ EWFIKNRVRN FYSVSISGYH IAEAGANPIT
781 QLAFTLANGF TYVEAFLARG MAVDDFAPNL SFFFSNGMDA EYSVIGRVAR RIWAIAMRDK
841 YGAGERAQKL KYHVQTSGRS LHAQEMDFND IRTTLQALCA IYDNANSLHT NAYDEAITTP
901 TPESVRRALA IQMIIDAEWG LADNENPLQG SFIIEELTDL VEEAVLAEFD RLSQRGGVLG
961 AMETGYQRGR IQDESMLYEQ KKHDGSLPII GVNTFLAEDS DRPPRELKLA RATEEEKQSQ
1021 LARLADFHAR HAHEAPAALE RLKQAATSGE NVFEVLMDAV RCCSLGQITE AFFEVGGEYR
1081 RNI
//