LOCUS ADG88289.1 1575 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 superfamily I DNA/RNA
helicase protein.
ACCESSION CP001874-1552
PROTEIN_ID ADG88289.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1574"
/inference="similar to AA sequence:KEGG:Noc_0920"
/note="KEGG: noc:Noc_0920 superfamily I DNA/RNA helicase"
/transl_table=11
BEGIN
1 MSMASRARDP ELIDSTIRMV EFLRDLASAQ RIPIRDVDEY GEVLWLADLP DGIAPRVQAG
61 PGEAVLSVDY VRLTPPPVPP SVLEGWLVTP DLSDPERVPE LAEIGPRSIP VLSDDGTTVW
121 RQETIGDRPD VTEAYSRWLP VWQAWAEEER DRARQQRWHR GLYSIATRLS QMDDQLELVL
181 ATGLLLWRAP DGTRVRNHLL TTRVHLRVDA DTERVEVVLG EASPVLQDRE LLADLPGFTP
241 ARTDRLRQRA RDGEGAGLRD EAGEILQAWC DRGLERPAVY RPDWTPGGAP GEVAEVRLAP
301 ALVLRRRDRG SLIAYYDAML TALTGPDATA PLGLAQLVRP LEPEERMAFL EESGARVALG
361 EDPLFPLPAN PEQRMIMTRL NEDNGVVVQG PPGTGKTHTI ANLVSALLAQ GQRVLVTSQK
421 AQALRVLRDK LPPEIAGLCV SMTDVGRGGS AELETGIKEL SIRYAGYDPR LQAERISAAR
481 RRLEEARRTA AELTDRIRAL RESETYVHRE IAPGYRGTLA EIARRLKREE AECRWMPVPM
541 PPTAPAEPPI SVGEAAELVE LLAGETPQRK ARPSQRIPDV AALPTVERLK ELIANEAAAQ
601 MVARDASTEV SGRLEHLDPE LIGRLEKIAA GIAADLHRLG LPEDAAAWDT ADWTVRALSD
661 ALAGRETALW QQLADQAGRL AALRERTQRI AFRTISHPRL EDPGAAGRYL QAMQALRDHL
721 AAGNRLKRGL LRPAVQRTAE PYLAEVSVDG VQPTNAELLS LVIDDIEGRQ IADLLRRAWR
781 LVGVEFPDEP LERLSAQLAD AFDRLSVVRR IADAVAETVG LLNSAGVRLD LRTPAEWLSY
841 SAALRAVRLK LAAERATAAL EELHAALEQQ IRLGSPAPEL VEAANAVAAR DAVTYQLCLN
901 ALATAQREQA EQRRCDELAD KVRAAHPALL KLLAEAGSWK PHMSSWERAW HWAKAYTFFT
961 EQRRPGLEQQ LEAELEDATR RTLRLTAELA AEQAWDAALA RMNSRQTTAL RAYQDHITKL
1021 GKGTGRYAEK YRALAREAMA VARDAVPAWI MPIQQVLETI PPVRDSFDVV IVDEASQASI
1081 DALFLLWLAP RIIVVGDDKQ CAPLAIRRGE LEPIFAKLAT YLPDMPPYLR DAFTPNSSLF
1141 DLLATRFGSV LRLKEHFRCM PEIIEFSSRQ FYADEPLVPL RQFGADRLPP LKVVRVHGAS
1201 TEGSSTRLRN RVEAEAIVEQ IVACNADPAY DGKTFGVVVL QGTGQVQLIH GLLLERLDLK
1261 DWERRRLRVG TPPDFQGDER DVVFLSMVIA ERRSAVTSTE WQRRFNVAAS RARDQMWLFH
1321 SVSPDLLAPT CLRRSLLTYM LNPPAALGAE PLSDVTPDEP HPSFDSLFEQ RVFLRIREHG
1381 YHVIPQYEVG GRRIDLVVVG AGGRLAVECD GDHWHGTAEQ RAADLDRERE LKRAGWRFWR
1441 IRESEFYFDP DAALKPLWEE LERRGIRPGE VIPEGAAAED SWRAVTLSTE PGWDGLEDDD
1501 LEAGDPSDLE PTIGELPAVP WRDASPATGT GRPAAARTPT AQIRAWARQQ GYAVGSRGRI
1561 PAEVIEAYRR AHGTG
//