LOCUS ADG88260.1 1195 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 conserved hypothetical
protein protein.
ACCESSION CP001874-1523
PROTEIN_ID ADG88260.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1545"
/inference="similar to AA sequence:KEGG:BTH_I0114"
/note="KEGG: bte:BTH_I0114 hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR002052"
/db_xref="InterPro:IPR002296"
BEGIN
1 MTVVPAALLK DLQRQVTLVA EDLRRQAERV PELGARLEGM YRAANEVGRT GETWNAWLTA
61 QSEQAASSWV VACTFIRFCE DNDLTAHRWI ASRDANGNAT TEAADAEAAW IRRNPRLTAR
121 EWLREAFTWL RATRAGQALF PDTDFVWWWD ISADMADALI AAFRRRDADG VRLAHDFHSP
181 ELDTRFLGDL YQDLSEHVRK RYALLQTPEF IGDFILDRTL TPAIDDFGLD GLKLIDPACG
241 SGHFLLGAFD RLLQAWAAQA PGMDERVRVQ KVLDSIHGVD INPTATAITK FRLMVAALQA
301 CGVTRLDDPG IPALRLNVAT GDSLLYASKF GGRQTELQVQ DGSLVAHRYD WEDIDRYPGI
361 LAHGRYHVVV GNPPYITVKD KALNLAYRDR YPTCHMKYAL SVPFAELFFR LAVWDTERPG
421 YVGQITANSF MKREFGKKLI EEFFAAKVEL THVIDTSGAY IPGHGTPTVI LIGKNRDRNR
481 LGTIRAVLGI RGEPSQPEDP RLGLVWRSIS GHIDQPGTET EYVSVADLPR EWFTAHPWTL
541 GGGGSAQLQT LIESMAQVKL GELVESIGIT CFTLEDDVYV FPERCLDRRM IPKDFRRPMV
601 LGDGLRDWGI SVNGSISVFP YDFNFLPVEV ENERVLYLHF WPYRTNLSKN IMFGGRTKVA
661 AGLRWSEFGR LTVNKLRTPL SITFAFVATH NHFVLDRGGK VFKQSAPVIK LPREKTEDEH
721 LRLLGLLNSS TACFWLKQVS YPKGGDPIGD EGARVSLEGW SDRYEFTGTK LQDFPIPEGA
781 PLERARRLDA LAQELATVMP QHVCARGVPS REALAEARRR YHEIRAEMIA VQEELDWEVY
841 KLYGILDEDL TYDGDDLPGL ALGQRAFEIV LGRKVLDGEV ETQWFARHGS TPIRDIPAEW
901 PQAYRELVQR RIEMIENKPL IGLVERPEYK RRWAAEPYEK MQAEALRTWL LDRLEDRRLW
961 FDEAEHPRAL SAAQLADLVR TDADFRQVLD LYLGRPDYDI TAEVAALLKD EHVPYLAAYR
1021 YTESGLRKRQ DWEHVWALQR REDAGEKVEI PVPPKYGPKD FAAQSYWRHR GKLDVPKERF
1081 IGYPGAERDG DPTPVYGWAG WDHLQQAKAL ASLIIERGYP TGDPRVTPLL AGIAELEPWL
1141 HQWHNQYDAV YGEPPAGFFT RWLETKLTEH GLTREALAAW RPETKQRGRR ARKGA
//