LOCUS ADG88258.1 1108 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 hypothetical protein protein.
ACCESSION CP001874-1521
PROTEIN_ID ADG88258.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1543"
/inference="ab initio prediction:Prodigal:1.4"
/transl_table=11
BEGIN
1 MTTVLSDWEL AALLDRLESE WGPKLSSVSL ITELEVDRRT LDAAARALGH LYRLRVEKRR
61 HRSFFDRWPA CIAVTLTGVA AHRYQRGTYW PYLWEALDCA GRPDLQDATA WGKAYLATLE
121 RFGLPVLDDP QRYVGPILMH AGIPTYCLRD FFTLLVQRRR QDPTIDAGTL LSWATDRPGR
181 LGTLDKPAQN FIRFGTDYAL DVIDRCLDLL DRLHSPDPDL SGLGLPARFL DRAQELAREG
241 ELDLIREPAP GRGRRRVEPP HLAIDPYGQG VQIVLPPIGE APDGTARWQV IVDGVPTVVK
301 SRALWVGAAE GAPATTFPLP RPARSAQVSL YGTAHETHLD IVDPGDPLLI FSEDGRHVSP
361 RLGVPPDQIW VLHPRDRDLA SDGEIRVVTE SPLPIGWGGW RLALVEPAGA TWVGLSGGRH
421 RPIRGYSRPR VITSDPVPGV TTPYGSPVHA APPRVWLPAE ATLTWHVDIR PAAGGPAVFT
481 GTFTVGEPVE LGEELWAGLS RPLLGAFEIT VRGPIGRSTR RTVVIAEGLT AAYHPRVRLF
541 TPEGLAPGRA VLTAGPGMTV EPATPEYAPG EREHVVTCTT ASESEPLLVS PPQMRVLLER
601 RGESPKWSSR PVRLAAEFFA EAESLRVDLP GADTLPPLEL HAGGQCVQRL TPQGGRYDLT
661 QAQDTVARYR SADLVLSVPG YRLPIGYVRP ARLASGVTAS GDRLILDECV WVDGLTAGVY
721 LYTAPWRGPE LIPVERDGSI PLPPALQHAG PLHVRLAVED PWAPAEWPRW PKPSELLACP
781 MPGHYSGADA EERWLSGYLA GAKTFPPEVT RLDRLWAIVD LANRVDYAAA GRWIGHCAAA
841 LRRDPEALRH LPAAGLPPDR TVVAVITTGL AAGRTAGFRE SDVGLWRTAP VAAALLSSPV
901 LPEIADHPDL RAEVEAVCGA AAMEILLGRG DPYPHVGKFD RAAEVLARHE PERLEELWSA
961 AQVVPKALLD VDTRMAAARA LFDRRNSRDA RTLAEVSAHL IRHALTALRG TRLRGLERYV
1021 TERCDPDRLE GWVSLPAVSI ACALLARAAA RGHEGCRDLE ERFRPLWRML AKLAPDLTAI
1081 DLIRAEFLIA ASEDHSPPSG VAERSMVT
//