LOCUS ADG88143.1 1174 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 DNA polymerase III, alpha
subunit protein.
ACCESSION CP001874-1406
PROTEIN_ID ADG88143.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1425"
/inference="protein motif:TFAM:TIGR00594"
/note="KEGG: pca:Pcar_1222 DNA polymerase III, alpha
subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM:
DNA polymerase III alpha subunit; PHP domain protein;
nucleic acid binding OB-fold tRNA/helicase-type; SMART:
phosphoesterase PHP domain protein"
/transl_table=11
/db_xref="InterPro:IPR001412"
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR011708"
BEGIN
1 MGESFVHLHV HTEYSMLDGA ARLKQMFKLV GELGMPAIAI TDHGNLHGSY DFYKQATAAG
61 IKPIIGIEAY VAPESRFNKQ PVLWGEPHQR GDDVSAGGFY THLTIWARNK TGLHNLIKLS
121 SRAYTEGFVR KWARMDAELL AEHAEGLMAS TGCPSGEVQT RLRLGQYDEA LKAAAKYQEI
181 FGKENFYLEL MDHGLDIERR VRDDLVRIGR TLGLPPVVTN DSHYTYQSDA AGHDALLCIQ
241 TGKQLNDPDR FRFEGTEYYI KTPEEMRALD SSDLWQEGCR NTLAIAEKVD PTGFFEYKNL
301 MPTFPIPEGK TEEEYFREKV WEGMRRRFPD GVDDEHRELV EKEISVIVQM GFPSYFLVVA
361 DFIMWAKNNG IRVGPGRGSA AGSLVAYALG ITDLDPIPHG LIFERFLNPE RVSMPDIDVD
421 FDERRRADVI RYVTEKWGAD KVAMIATFGT IKAKAAIKDA ARVLGYPYAL GDRITKAFPP
481 AVMGKDIPLS GIFDPEHPRY HEAGELRKMY EEDPDVKAAI DLGRGLEGLI RQTGVHAAGV
541 IMSSEPLTDH IPIMRRDSDG AIITQFDYPT CEALGLLKMD FLGLRNLTII DDCLKMIEAN
601 TGEKIDLLEL PLDDAKTYEL LARGDTLGIF QLDGGGMRSL LRLMKPDNFE DISAALALYR
661 PGPMGANSHI NYALRKNGQQ EITPIHPELE EPLKDILSTT YGLIVYQEQV MAIAQKVANY
721 TLGGADLLRR AMGKKKKEEL DRQFEFFEKG MKENGFSDEA IRALWDILVP FSDYAFNKAH
781 TAAYGLVSYW TAYLKANYPA EYMAALLTSV KDDKDKSALY LNECRRMGIK VLPPDVNDSD
841 FDFTPRGGDI RFGLSAVRNV GANVVDGIIK ARKEKGRFTD FADFLRKVPA QVCNKRVIES
901 LIKAGAFDSL GHERKGLFMI HEQAVDAVID IKKNEAIGQD SLFGAVEGAE DTTFDVQVPP
961 GEWDKRTLLQ FEREMLGLYV SDHPLLGVEH ILAAGSDCSI AALQDESHPD GQVVTVGGIL
1021 SGLQRKITKK GDTWVLATLE DLEGSIEVMI FPSTYQLCAT ILAEDAIVFV KGRVDKREEV
1081 AKLIAMEVTV PDLSQSSGNG PLVVSMPLSR CTPPVVGRLK EVLTTHPGTT EVHLQLHNGS
1141 RTTVVRLDDR LRVTPSPALM GDLKQLLGPA CLGA
//