LOCUS ADG88036.1 796 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 Vault protein inter-alpha-
trypsin domain protein protein.
ACCESSION CP001874-1299
PROTEIN_ID ADG88036.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1318"
/inference="protein motif:PFAM:PF08487"
/note="PFAM: Vault protein inter-alpha-trypsin domain
protein; von Willebrand factor type A; SMART: von
Willebrand factor type A; Vault protein
inter-alpha-trypsin, metazoa; KEGG: mno:Mnod_5519
LPXTG-motif cell wall anchor domain protein"
/transl_table=11
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR005829"
/db_xref="InterPro:IPR006587"
/db_xref="InterPro:IPR013694"
BEGIN
1 MTGPIITRLR PEECRPVPGA GLGALGTERG NLPLESVTVT ARVTGLIAGV TVVQGYRNPH
61 DVPLEATYVF PLPPRAAVTA FRMEADDRVI EGVLQERGRA RAAYERALAE GRPAAIAEED
121 RPDVFTIRVG NIMPGERVTV RLELSQPLPY EDGAAEFRFP LVVAPRYIPG SPLGAPAAGS
181 GVVPDTDAVP DASRITPPVL LPGFPAPVRL SFTVTLDPAG LELREIRSSL HDVAVEGDTI
241 RLRPGERLDR DVILRFAYRA SGGLLLVPDE PGDGAAEDGE GTLMLTVLPP DDREAARRPR
301 DVVLVLDRSG SMAGWKMVAA RRAAARIVDT LTERDRLAVL AFDNVIERAF PDGLTAATDR
361 ARYRAVEFLA RLEARGGTEM LAPLEEALTA LAAAAEGGRD AVLVLVTDGQ VGDEDRILER
421 MASRIGGVRV HAVGIDRAVN AAFLGRLAVL GAGRCELVES EDRLDEAMEH IHRRIGAPLV
481 TDITARPDGL EVIPGTLTHL GSLYPGVPLT LLGRYRGRPT GALTLAGRTA SGEPWETRVT
541 GRAAANPAAR AIWVRAHLRE LEDRYAAGDT SLEERIVATS LRFGVLCRFT AFAAIDTRVT
601 ADGAPEHRVI QPVEPPSGWE MTELATGAPM MATLASFGGA PPPPGAPAGS FGAMLRRAGR
661 FAAGPHLSSP AAGTAPAVGF DTVRPLLIQE LARLREAQPL PGPELRRYLA DLASRLRVIA
721 HMLGGHAELT ALADELARAE LPGAEPGDLC RRAIDLLIAL TGGPGTGGGA ETGGHGAGGG
781 PGGAAGPGRA FWRRRP
//