LOCUS ADG87835.1 1644 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 DEAD/H associated domain
protein protein.
ACCESSION CP001874-1098
PROTEIN_ID ADG87835.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1113"
/inference="protein motif:PFAM:PF08494"
/note="PFAM: DEAD/H associated domain protein; DEAD/DEAH
box helicase domain protein; helicase domain protein;
SMART: DEAD-like helicase; helicase domain protein; KEGG:
ade:Adeh_2092 DEAD/DEAH box helicase-like"
/transl_table=11
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR013701"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR014021"
BEGIN
1 MSVLDCFSAV TREWFTTAFV TPTAAQEGAW SSIARGENTL VVAPTGSGKT LAAFLWAIDR
61 LAAERMRDGG DPPPEGRPAA PRTCRVVYVS PLKALAVDVE RNLRAPLAGI RQTALRLGLP
121 APDISVAIRS GDTTAEDRRR FAARPADILI TTPESLYLIL TSRAREALRG VETVIVDEVH
181 AIAATKRGAH LALTLERLDA LLPAPAQRIG LSATVRPVGE VAAFLGGARP AVVVQPPAEK
241 SIELDVVVPV EDMTELAPPA PGADGVPPEH RRSIWPHVER HLLDLIEAHR STIVFANSRR
301 LSERLCTRLN ELAEERRAGD GGPLGTETDG PGADGLAADP ARNGRPRGAG GAPGGAPAEI
361 MAQAGVAAGA PREVARAHHG SVSKEERSQI EEALKAGRLP AVVATSSLEL GIDMGAVDLV
421 ACVEAPPSVA SCVQRIGRAG HRVGAVSRGV IFPKYRGDLI QTAVVAERVR AGLIEEIRYP
481 RNPLDVLAQQ IVAMTALDEW KVDELEAVIR RAAPYATLPR TALEAVLDML AGRYPSEEFA
541 ELRPRIVWDR VTGTVRARPG AQRLAVTSGG TIPDRGLFGV YLAGEKGSRV GELDEEMVYE
601 SRPGDVFVLG ATSWRIEEIT ADRVLVSPAP GQPGKLPFWH GDAPGRPAEL GRAIGAFLRE
661 LSGAEPRAAR ERLRAAGLDE YAARNLLAYL AEQREATGYV PDDRTIVVER FRDELGDWRV
721 VIHSPYGTRI HAPWALAIGR RLRERYGIDA QAIHADDGIV LRIPDTTDDP LTDLALFDPD
781 EIERIVTEEL GGSALFAARF RECAGRALLL PRRLPGRRTP LWQQRQRAAH LLATASRYPS
841 FPVVLETVRE CLQDVFDMPG LVALLRDVAA RRVRIVEVET AQASPFAASL LLRYVGAFMY
901 EGDAPLAERR AQALALDSAL LAELLGQADL RELLDPEVVA ETERELARLD RPLRDAEDLA
961 DLLRSHGPLL AEDVAVRGGD PGWLAELERQ RRAIRVRVAG REQWAAAEDA WRLRDALGVP
1021 LPPGVPREFL EPPDHGGPDT PAARPDPLGD LVARHARTRG PFSAGTAAAR FGVGVAVIED
1081 ALRRLAAAGR VVSGEFRPGG RGAEWCDAGV LRMLRRRSLA RLRKEVEPVQ PEVLAAFLPA
1141 WHGIAPVPGD GAEAGRPAIG ATGTGPAYRP GGSWRDRAMD ALVDAIERLQ GAAVPASALE
1201 TLILPARVPG YSPDLLDELT ASGEVIWAGQ GSLPGGDGWV ALYFADTAPL LLPRPLEITM
1261 TPLHERIIEV LSGGGALFFR ELSDRVGAAM LRDLADPGTA ASAGSPGAAP PGGASSAQAP
1321 PGRTSPAARA GAGHPGAVPD DAALAAALWD LVWAGRVTGD TLAPLRAVLG TGRPAHRPRT
1381 ARRRRPMLPT RSGPPTVSGR WWLVPAPAED ETRRAQAQAE ALLNRHGVLT RGGITAERPP
1441 GGFSAIYQVL RAYEESGRCR RGYFVEGLGA AQFALPGAVD RMRAMVHRPD ASASAHPVAG
1501 PSEWPVTGAP PSAAPGTGPA RTAPQAVVLA AADPANPYGA ALPWPEGPAD AAHRPGRKAG
1561 ALVVLVDGRL ALYLERGGKS LLSFGSEDDL APAARALAAT VRMGALEKLT VERANGAPIT
1621 ASPIAAVLEE AGFHPTPRGL RIRA
//