LOCUS ADG87833.1 784 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 ferredoxin protein.
ACCESSION CP001874-1096
PROTEIN_ID ADG87833.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_1111"
/inference="protein motif:PFAM:PF00111"
/note="PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding
domain protein; Oxidoreductase FAD-binding domain protein;
cytochrome P450; KEGG: reh:H16_B1279 two domain protein:
cytochrome P450"
/transl_table=11
/db_xref="InterPro:IPR000951"
/db_xref="InterPro:IPR001041"
/db_xref="InterPro:IPR001128"
/db_xref="InterPro:IPR001433"
/db_xref="InterPro:IPR002397"
/db_xref="InterPro:IPR006058"
/db_xref="InterPro:IPR008333"
BEGIN
1 MGSEPVAAIR GSGDAAPAAT GCPFHPGVDP SGRPISANAA AFDPFHETFQ EDPAGSLRWS
61 RDGEPVFYSP RLGYWVVTRY EDVKAVFRDN ITFSPSIALE KVTPVCDEAT AVLERYGYAM
121 RRTLVNEDEP VHMRRRRALM EPFTPAQLAH HEPLVRRLVR EHVDRIIDTG KADLVEEMLY
181 DVPLTVALHF LGVPEDDMAM LRKYSVAHVV NTWGRPTQEE QVAVAESVGR FWRFAGEVLD
241 RMRQDPSGPG WMPYAIRLQP QMPDVITDSY LHSIMMAGIV AAHETTANAA ANAIRLLLEN
301 RPVWEEICAD QRLIPNAVEE CLRHSGSVKA WRRIATTDTK IGDVEIPKGA KLLIVTSSAN
361 HDERRFDGPD EVDVRRENAG DHLTFGYGAH QCMGKNLARM ELQIILQELT TRLPHMELVP
421 GQRFSYLPNI SFRGPEHLWV QWDPARNPER TNPEILRRRL PVQIGSARRP LPRSVTVLAI
481 EPEAEGIVRI TLADAHGKPL PAWSPGAHVD LELGGLTRQY SLCGDPDDRS TYQIAVLKDP
541 DSRGGSRYVH ERLAVGDVLL MRGPRNNFPL DPGARRYVFI AGGIGITPII TMADRARRRG
601 ADYHIHYCGR SAAAMAFLGR LRRDHGDRLT LYRSAEGTRL DIARLLAEPQ EGTQIYVCGP
661 QRMLDAVAEA TRHWPDDAVR VESFVSALDR FDPAKNHAFD VRLADSGRVI RVPADQTVLG
721 ALRAAGIDVL SDCEEGLCGT CEVPVAEGEV DHRDMVLTKA ERAQHSSMMT CCSRARGGSI
781 TLRL
//