LOCUS ADG87513.1 1646 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 NAD-glutamate dehydrogenase
protein.
ACCESSION CP001874-776
PROTEIN_ID ADG87513.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_0789"
/inference="protein motif:PFAM:PF05088"
/note="PFAM: NAD-glutamate dehydrogenase; KEGG:
tmz:Tmz1t_1660 NAD-glutamate dehydrogenase"
/transl_table=11
/db_xref="InterPro:IPR007780"
BEGIN
1 MSLDVALSRD ESDKALDELL RAAAEACADT LGVRQVDGED VLGYLRRYYK NVTPEELTGR
61 GLAEVYGPAL AHRRMAELRP QGRALVRVHT PTRDEDGWET GRSVVQIVTD DMPYLVDSVT
121 AEIDRHGIGC YLVVHPQPEV RRDVTGALLD PGAEHLSGQV IRESWMYIEI DRQPDPARCA
181 RLEEDLQRVL LDVRSAVEDA DKMRALVLRI ADDLTAAPPP VDAAEVGESA DLLRWLADGH
241 FLFLGSREYR LSRAEEGEHL SAVPGTGLGI LRADKAESDS FAALSPELRA RARDPRVLII
301 TKANSRSTVS RPNYLDYVGV KVFSPEGDVI GERRFLGLFT HTAYSESITR IPVLRRKLAE
361 VLDRVGIAAD SHDGKDLIEI LDTYPRSELF QTSVDHLVPI ALGLLRLRER KQVRLFLRRD
421 DYGRYISCLI FLPRDRYTTK VRVAMQRILL EELGGTSFDY SAVVGESMLA RLHVVVRGEP
481 DTPVRELPEN VEELEARLAA AARIWEDDLA AALQELCGDE EAARLIERYG SAFPEGYKAD
541 FSPYDAVADI KRLERLSDDP ADIGMNLYRP EGAAAGEYRF ALYRLGAPIS LSRVLPLLQR
601 MGVEVVDERP YEITRDHGAS GQAWIYDFGL RFTPPADVDE RELRRLFHDA FAVLWRGDVE
661 CDGFNALVLA AGLTWEEAEV LRAYARYLRQ AGTTFSQEYI ERALLGNVRI ARLLVRLFEA
721 RFDPRLPADA RTEVCDALNE EILASLDDVA SLDEDRILRA YLEMINATLR TNVFQPARAD
781 GRDPGSGGSK FVTGKRKPYI SLKFDPQAIS VLPQPRPKYE IFVYSPRVEG VHLRFGKVAR
841 GGLRWSDRME DFRTEILGLV KAQMVKNTVI VPTGSKGGFV VKRPVTGGRD EQLAEGIACY
901 RQFISGMLDL TDNLVGGRVT PPADTVRHDG DDPYLVVAAD KGTATFSDIA NEVAREYGFW
961 LGDAFASGGS VGYDHKAMGI TARGAWESVK FHFRTMGIDV QTTDFTVVGI GDMSGDVFGN
1021 GMLQSEHIKL IAAFDHRHIF VDPSPDPARS YAERLRLFRL PRSSWDDYDR SCISPGGGVW
1081 PRTAKSIPVS PQMRSALGLP DGVTSLTPNE LISAILRAPV DLLWNGGIGT FVKATAENNA
1141 DVGDKANDAV RVNASELRCK VVGEGGNLGF TQLGRIEYAL GGGLINTDFI DNSAGVDTSD
1201 HEVNIKILLD EAVRDGEISA EERDRIFLGM TDEVARLVLE DNYAQNLVLA AARAQAPEML
1261 HVHTRYLRKL ERDGLVDRKL ESLPSEKALA ERRQAGLGLT GPEFAVLLAY TKLLIDSELL
1321 QSDIPDEPYL ESWLVSYFPS ALRERFRSYM DAHPLRREII TTRVVNDVVN FGGTTFLFRF
1381 WEETGASTAD IVRAYLVTRE VFDLPGVVRQ IQALDNKVDT ATQLAMLFEA RKLSERGTRW
1441 LLVNRRPPVE LGPTAELFAK GARELLGVLP SLLVGRDLAA YEERRDHFIA RGVPKDLAER
1501 IAVMVPAYST FDLVEIAAQT GRPLQEVAEV YFALADRLEL TRLRERVIAL PRDSRWSSMA
1561 RSALRDDLYA AHAVLTRQVL TVSEAGLSPE ERLDRWTEAN RPALARMRQT ISEIWESGTF
1621 DLATLSVALR AVRTLVTASD LPYAEG
//