LOCUS ADG87471.1 881 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 Radical SAM domain protein protein.
ACCESSION CP001874-734
PROTEIN_ID ADG87471.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_0746"
/inference="protein motif:PFAM:PF04055"
/note="PFAM: Radical SAM domain protein; SMART: Elongator
protein 3/MiaB/NifB; KEGG: pzu:PHZ_c2536 hypothetical
protein"
/transl_table=11
/db_xref="InterPro:IPR005244"
/db_xref="InterPro:IPR006638"
/db_xref="InterPro:IPR007197"
BEGIN
1 MRNEYVNPTA MRRALARARD GKTLDAAEAA ILMRARGEDL EALLGHASRV RDAGLVAAGR
61 PGVITYSRKV FIPLTRLCRD RCGYCTFAAA PHELPSPYLS PDEVLDIARR GAAMGCKEAL
121 FTLGDRPEAR WRQAREWLDA HGYDDTLSYV RAMAIRVLEE TGLLPHLNPG VLTWRDLQRL
181 KPVAPSMGMM LETTSRRLFE EKGMPHYGSP DKDPAVRLRV LEDAGRLSVP FTTGILIGIG
241 ETIEERVDSL FAIRRVAREY GGIQEVIVQN FRAKPDTAMR GMPDADLHDL AATIAVARLI
301 LGPKMRIQAP PNLIGGEYAL MIRAGIDDWG GVSPLTPDHV NPERPWPQIE ELAERTAAAG
361 FRLRERLTIY PEYVRAGEPW LDPRLREHVA ALADPETGLA REGAAPVGRP WQEPDGGFPL
421 RTAGRTDLHT AIDTEGRRSD RRADFDTVYG DWEALRERLP GRTAGGGAAG RPIDGTVRAA
481 LRQAERDPAR LTEEQALALL DLAGDAEGRG ADDAGLDELC RIADGLRRDT VGDEITYVVN
541 RNINFTNVCY TGCRFCAFAQ RRTDLDAFTL SLEEVAERAA EAWEAGATEV CMQGGIHPDL
601 PGTAYFDLAR AVKERCPEIH VHAFSPMEVV NGASRANMSI EEWLLAAREA GVDSLPGTAA
661 EILDDEVRWV LTKGKLPTRD WIEVITTAHR LGIPTTATMM YGHVDTHRHW VRHLRLIRSI
721 QEETGGFTEF VPLPFVHHNT PIYLAGLARP GPTARENRAV HALARIMLHG AIDNIQVSWV
781 KLDAGLLRAI LAGGVNDLGG TLMEETISRM AGSESGSYRT ISELAELVAP TGRPLRQRTT
841 LYGTPPPERI EAARRSDGVC RSVRAVLPLV TGPGAGAPCH D
//