LOCUS ADG87091.1 973 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 transcriptional regulator,
LuxR family protein.
ACCESSION CP001874-354
PROTEIN_ID ADG87091.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_0361"
/inference="protein motif:PFAM:PF00196"
/note="PFAM: regulatory protein LuxR; TPR repeat-
containing protein; Tetratricopeptide TPR_4; Bacterio-
opsin activator HTH domain protein; Tetratricopeptide
TPR_2 repeat protein; SMART: regulatory protein LuxR;
Tetratricopeptide domain protein; KEGG: rle:pRL120769
putative transcriptional regulator"
/transl_table=11
/db_xref="InterPro:IPR000792"
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR007050"
/db_xref="InterPro:IPR011717"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
BEGIN
1 MLVPMTRRPV SPAFVGRDAE LESLRDAFDQ ARKRATTTVL IGGEAGVGKT RLLARFAEEA
61 GLDGAHVLIG GCVELSAEGL AYAPFIAVLR QLVRELSAAE VTALLPDGAA RDLARLLPEF
121 GEPNADGDTE SARIRLFELI LILVERLAER RPVLLAIEDV HWADRSSRDL IAFLSRNLTA
181 APVLMVLTYR SDELHRTHPL RPVLAELGRL GSVVRIELPR FTRHEVALQV AGILGTTPEY
241 DRVTTIFERS GGIPLFVEAL LEAGEDCAVP ESLHDLILRP VDRLPERTQQ VLRIAAAGGV
301 RVGHDLLAAV SGLSDAELED ALRPAIAANV LQVADGRAYA FRHALIREAV HDELLPGEHA
361 RLHARYAEEI GNDHALVPPG RAAFEIAHHW YAARNDLWAL ISAWEAAEAA HRSFAYTEQA
421 QFLDRVLALW DKVPDAAERI GADHVGVLER AAEAAFVSGD MERGLRYVKA ALAELDEKTA
481 PERVAELLVR RANINFQRGR PGALDDLRRA ERLVPEPSDT RTTVLLRLGY VLLLNGQVTE
541 GTKATQEALE IARRKGDERN EADLVLNLSL GHWLAGDLEQ ARVLDDRAIS LGKRLNFPLV
601 VLRALANKID TLDNLGRSEE AVALADEGER LARQYGRYRH QGVFIANNRA EALVSLGRWD
661 EAVEVVERAL AMDPAPRVRA HCLRVRTDIA IARGEQDVAR AGLAELRALT DVQAEGVQEL
721 ANNTRLLICW HLLMGEPLRA IEVAERLFDA PLRNKPLLAW RLSATIRYAC EAAAAVAPER
781 AAALRARVAE LSYGDRPVEG HGPVCEAYRH VARGSFDTAA EMWRRLNRPY ERALALVHAA
841 QTVVASGDRE GVAVRLREAH PIATQLGAAP LAARIETLAR RHQIPLGRPG TARAGSAGPG
901 TAGAGSAGGV ALTPREREVL RLVAAGRTNR EIAAELFISA KTVSVHVSNI LAKLGAATRG
961 EAAAAAHRLS LLD
//