LOCUS ADG86975.1 861 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 ATP-dependent chaperone
ClpB protein.
ACCESSION CP001874-238
PROTEIN_ID ADG86975.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_0243"
/inference="protein motif:TFAM:TIGR03346"
/note="KEGG: ade:Adeh_0385 AAA ATPase, ClpA/B; TIGRFAM:
ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain
protein; AAA ATPase central domain protein; Torsin; ATPase
associated with various cellular activities AAA_5; Clp
domain protein; SMART: AAA ATPase"
/transl_table=11
/db_xref="InterPro:IPR001270"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR004176"
/db_xref="InterPro:IPR010448"
/db_xref="InterPro:IPR011704"
/db_xref="InterPro:IPR013093"
/db_xref="InterPro:IPR017730"
BEGIN
1 MEYKLTQKSQ EALSAAVRRA TADGNPEVMP AHLLAALLAQ TGGIAVPLLE AVGADWRRLR
61 ARNEELLGRL PKARGATVSA PSTSRQLISV LNTAAERAKR LEDEYVSTEH LMVGLASDGG
121 QVAELLRQEG ATADALLEAF EKVRGHARVT SETPEDTYQA LEKYGVDLTE RARAGKLDPV
181 IGRDAEIRRV IQVLSRRTKN NPVLIGEPGV GKTAVVEGLA QRIVAGDVPE TLKNKRLVAL
241 DLGAMVAGAK YRGEFEERLK AVLNEIKASD GQIITFIDEL HTVVGAGAAE GAMDAGNMLK
301 PMLARGELRM IGATTLDEYR ERIEKDPALE RRFQQIYVGE PSVEDTIAIL RGLKGRYEAH
361 HQVQISDSAL VAAATLSDRY ITARFLPDKA IDLVDEAMSR LRMEIDSRPV EIDQLQRSVD
421 RLKMEELALA KETDAASRER LEKLREELAN KQEELNALIS RWEREKAGLN KVGELKKQLD
481 EARSAAERAQ RDGDFETASR LMYGEIPRLE KELSEASKIA EAAETAPMVK EEVGPDEIAE
541 VVSAWTGIPA GRLLEGESAK LLRMEDELGK RLIGQHRAVQ AVSDAVRRAR AGISDPDRPT
601 GSFMFLGPTG VGKTELAKAL AEFLFDDERA MTRIDMSEYS EKHTVARLVG APPGYVGYEE
661 GGQLTEAVRR RPYTVVLLDE IEKAHPEVFD ILLQVLDDGR LTDGQGRTVD FRNTILILTS
721 NLGSQYLVDP QLDQAAKHEA VMNAVRAAFK PEFLNRLDDI IIFDPLGTEE LTKIVDLQVA
781 RLARRLSERR LTLTVTPAAR EWLALTGYDP MYGARPLRRL IQTAIGDQLA KELLAGNIRD
841 GDEVIVDLDS ARDALTIRPA R
//