LOCUS ADG86878.1 1461 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 ATPase, P-type (transporting)
, HAD superfamily, subfamily IC protein.
ACCESSION CP001874-141
PROTEIN_ID ADG86878.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_0146"
/EC_number="3.6.3.8"
/inference="protein motif:TFAM:TIGR01494"
/note="KEGG: hch:HCH_00429 cation transport ATPase;
TIGRFAM: ATPase, P-type (transporting), HAD superfamily,
subfamily IC; PFAM: E1-E2 ATPase-associated domain
protein; cation transporting ATPase domain protein;
Haloacid dehalogenase domain protein hydrolase"
/transl_table=11
/db_xref="InterPro:IPR000695"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006068"
/db_xref="InterPro:IPR008250"
BEGIN
1 MFLTQLFASY APVLRDVLPE PLRGLVVTPR RVIACPGGLR IDLRGIGGPG TERSAALLEE
61 RLSALPGVER AEVNGRLGCV FVGCDPEAVD REELLEIARE LDEQERHAHE TPVRVVEEHI
121 RSIIRLATGV AGVGTIFTGI ALRAPRLSPA VPALVNLLNA TPVLREELDK RIGRGPANAL
181 FHTANLVTQT LTLRPLGLVA HSMAALSRYV ETRAAQRSWV ALERRLAEVP GSYRHVRARF
241 RRRPTHLPHG PIERYADLAS TAAALTYGFM RFAARQDERA LAVLTAITPK IAEYTREAFA
301 GAVRRALGER DTVVFDAEAL RRMDRVDTVV LDSDALTTGS WAIDRVEPLV DELDLNELYA
361 RLYRLLDFTD PGATRIDEEW SAAPLTDPAR FPGTHATEWR GRGMRLVEVR RADTPVALVG
421 LSREIDPLAV PIVAAAKAAG TVLLAGDEDG TAHRLAIDQV LPGGADLAHR VFEMQAEGHC
481 VLVVSRRARE ALAQADIGFG VMDPGTATVP WDADVAGGLP GLHLLLIGLR RAETASRDGV
541 RIGVAGGLIG ALFSFAGPAS GAVGRAQLVS SLGALVAVAW GELAGRALAR TPVPLRADPT
601 PWHAMSVPEV LARLGSSPRG ISEEEAERRR AAARPVEIAA PRSLARTVLG ELANPLTPAL
661 ASGAAIAALI GSAVDSVMIS GVMVINAFIG GVQQSQADRE LTRLTETTSV RVRVRRPEGT
721 VEIRKEDLVP GDVVELRAGD AIPADGRVIK SVGLEVDEST LTGESQLIAK RTEPTIAAAI
781 ADRASMVYEG TTVAAGTGLA VVVATGEMTE ARRAAQLGTA PPRVSGVELR MRELSRRVLP
841 LSVGSGLFLL VTELLRGRSL AAALVPAVSL TVAAVPEGLP FVATAAELAA ARRLSRRAAL
901 VRNPKTIEAL GRVNVLCFDK TGTLTEGRIS LQYVSDGRAG RPVEELTHHL RRVIAAAVRA
961 SPKTGGGRVL AHPTDRAIHE AAERLSITPR EGLQVWERVD EMPFEPGRGY HAVLGRTEHG
1021 HLLSVKGAPE IVIDHCTTAL RGTEVVPCDD AVRHELTREV ARLARQGYRV LAVAQRPASD
1081 RSDLDESRID ELCFLGFLGL ADPVRATAAE SVDRLMRAGV RIVMITGDHP STAEAIAVEL
1141 NTLNGGRIMT GPELDELDDE TLTKLLPEVS VFARVTPAHK VRIVSCLRRA GEVVAVTGDG
1201 ANDAPAIRIA NVGIALGSRA TPAARSAADL VVTDDRIETV VDAIVEGRAM WSSVRDALSI
1261 LVGGNLGEII YTIASSLIGA TALNARQLLL VNLLTDLAPA IAVALRPPTS TEPERLLTEG
1321 PEASLGASLM REIYVRAGVT ALAAAMGWLA GRATGTRGRA ATIGLVALVT AQLLQTLSGG
1381 GTNRTVVLAV LASFALLCVI VTAPGVSGFF GCRPLGPVGW TVGLGSAGLA ALIGEVVQRW
1441 LLRPVASAAP RPALTPAPAA A
//