LOCUS ADG86744.1 834 aa PRT BCT 11-DEC-2013
DEFINITION Thermobispora bispora DSM 43833 DNA gyrase, A subunit protein.
ACCESSION CP001874-7
PROTEIN_ID ADG86744.1
SOURCE Thermobispora bispora DSM 43833
ORGANISM Thermobispora bispora DSM 43833
Bacteria; Actinobacteria; Streptosporangiales;
Streptosporangiaceae; Thermobispora.
REFERENCE 1 (bases 1 to 4189976)
AUTHORS Liolios,K., Sikorski,J., Jando,M., Lapidus,A., Copeland,A.,
Glavina,T., Del,Rio., Nolan,M., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Woyke,T., Goodwin,L., Pitluck,S., Ivanova,N.,
Mavromatis,K., Mikhailova,N., Chertkov,O., Kuske,C., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Detter,J.C., Brettin,T., Rohde,M., Goker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P. and
Kyrpides,N.C.
TITLE Complete genome sequence of Thermobispora bispora type strain (R51)
JOURNAL Stand Genomic Sci 2 (3), 318-326 (2010)
PUBMED 21304716
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermobispora bispora DSM 43833
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4189976)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M.,
Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082801
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Thermobispora bispora R51, DSM 43833
Culture Collection ID :: DSM 43833, ATCC 19993, CBS 139.67, IFO
14880, NBRC 14880
GOLD Stamp ID :: Gi02237
Funding Program :: DOE-GEBA 2007
Gene Calling Method :: Prodigal
Isolation Site :: Decaying manure
Oxygen Requirement :: Aerobe
Cell Shape :: Filament-shaped
Sporulation :: Sporulating
Temperature Range :: Thermophile
Temperature Optimum :: 55 - 65C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
##Metadata-END##
FEATURES Qualifiers
source /organism="Thermobispora bispora DSM 43833"
/mol_type="genomic DNA"
/strain="DSM 43833"
/isolation_source="decaying manure"
/type_material="type strain of Thermobispora bispora"
/db_xref="taxon:469371"
/note="type strain of Thermobispora bispora"
protein /locus_tag="Tbis_0007"
/EC_number="5.99.1.3"
/inference="protein motif:TFAM:TIGR01063"
/note="KEGG: bsu:BSU00070 DNA gyrase subunit A; TIGRFAM:
DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV
subunit A; DNA gyrase repeat beta-propeller; SMART: DNA
gyrase/topoisomerase IV subunit A"
/transl_table=11
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR002205"
/db_xref="InterPro:IPR005743"
/db_xref="InterPro:IPR006691"
BEGIN
1 MTEVNTPPGP PADRIEVIDL QAEMQRSYMD YAMSVIVSRA LPDVRDGLKP VHRRVLYAMF
61 EGGYRPDRGY FKSSRIVGDV MGSYHPHGDA SIYDTVVRLA QPWSLRYPLV DGQGNFGSPG
121 NDPAAAMRYT ESRMAPIAME MLRDIDKDTV DFQPNYDGRS REPVVLPSRF PNLLVNGSSG
181 IAVGMATNIP PHNLRETGEA VQWALEHPEL SDEELLEGLI ERIKGPDFPT GALIVGRRGI
241 EEAYRTGRGS IIMRAVVELE EDAKGRQCLV VTELPYMVNP DNLALTIAEL VREGKISGIA
301 DVRDESSSRT GQRLVIVLKR DAVPKVVLNN LYKHTQLQTT FGANMIALVD GVPRTLRLDQ
361 FVRHYIRHQI DVVVRRTRFL LRKAEERAHI LRGLLKALER IDEVIELIRR SPSATEAQTG
421 LMALLEIDEV QAQAILDMQL RKLAALERQQ IQDEYDGLMA QIADYNDILG SEMRQRRLVS
481 EELGEIIAKY GDERRTKITA YEGDMSEEDL IAEEDVVVTI TRGGYAKRTS IDAYRAQRRG
541 GKGVRGAQLR QDDIVEHFFV TSTHHWLLAF TNKGRVYRFK AYELPEAARD ARGQHLANLL
601 AMQPDEHVME ILSLRNYDEA PYLVLATRSG MVKKTRLAEY DSPRSGGLIA INLRDDDEVI
661 AARLVSEEDD LLLVSKNAQA IRFKATDEVL RPMGRATAGV IGMRFAEGDE LLAMEVIRDG
721 DEEVLVATEG GYAKRTPADQ YPVQGRGGKG VLTAKIVQSR GKLIGAIMVR PEDEVFAITS
781 NGGVIRTRAA EIKRSGRQTM GVRLMHLSEG DSLVALARNA ESLNNEENGA GDGV
//