LOCUS ADD69621.1 792 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 DNA gyrase, B subunit protein.
ACCESSION CP001968-2814
PROTEIN_ID ADD69621.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_2871"
/EC_number="5.6.2.3"
/inference="protein motif:TFAM:TIGR01059"
/note="SMART: DNA topoisomerase II; ATP-binding region
ATPase domain protein; TIGRFAM: DNA gyrase, B subunit;
KEGG: gur:Gura_0004 DNA gyrase, B subunit; PFAM: DNA
topoisomerase type IIA subunit B region 2 domain protein;
DNA gyrase subunit B domain protein; TOPRIM domain
protein; ATP-binding region ATPase domain protein"
/transl_table=11
/db_xref="InterPro:IPR000408"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR013506"
/db_xref="InterPro:IPR018522"
BEGIN
1 MDHKLNSYSD DSIRVLEGLE AVRQRPGMYI GSVGQRGLHH LVYEVIDNSI DEASAGFCDT
61 IDIIIHIDGS VTVEDNGRGI PVGIHPKVGR PTVEVVMTTL HAGGKFDSGS YFASGGLHGV
121 GISVVNALSE YAEVTVKRDG GVYYQKYERG TAVTEFKRTG DTSKRGTKVT FKPDHQIFET
181 LEFSYETLTR RFRELAFLNS GLKIKITDER YDKADEYHAE GGIVSYVKYL NKAKTVIIPE
241 PIYHMEMYED AVQVEFAIIF NDSYTENLYS FVNNIHTEEG GTHEAGFKAG YTKVFNNFVN
301 KHGLNKDKVN LTGDDVREGM SAIISIRLNE PVFEGQTKTK LGSAIAKTAV ESIMGKFLPD
361 FFEENPAVIK KILEKAMQAF RAREAARKAK ELTRRKNVLE VSTLPGKLAD CQEKDPAKSE
421 LFIVEGDSAG GSAKQCRDRR TQAILPLKGK ILNVEKARFD KLLSSNEIRA LITALGTGIG
481 KDDFNIEKLR YHKIIIMTDA DVDGAHISTL IMTFFFRYMT EIIERGYLYM ASPPLYKVKK
541 GKSERYIQNE ETMVNYLLDQ GLDGVDIAHV QPHRYKELLE NLIKLNRMVT KFEKKGYSRK
601 LVKLLASYDD LHFSKLEDKD FVDGLLAAMQ KYGILDQYVT NEIEFNEEYG RYNISLASHS
661 VTVSINTDLL ATPEFRELRR LGVYLKEIGD APYKLNVDGE ITNFETLTEF VSFVEQRGKK
721 GLGVQRYKGL GEMNPEQLWE TTVDPQSRTL YRVRIEDAEM ANELFSLLMG DVVAPRREFI
781 ENNALNVRNL DI
//