LOCUS ADD68513.1 938 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 Tetratricopeptide
TPR_2 repeat protein protein.
ACCESSION CP001968-1706
PROTEIN_ID ADD68513.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_1749"
/inference="protein motif:PFAM:PF07719"
/note="KEGG: hypothetical protein; PFAM: Tetratricopeptide
TPR_2 repeat protein; TPR repeat-containing protein;
SMART: Tetratricopeptide repeat"
/transl_table=11
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR013105"
/db_xref="InterPro:IPR019734"
BEGIN
1 MPPGSKISID LKNIIRLSSV IVLALAVVLS LTLSSCSGKE SNQQLEENLT EAAPVVSPML
61 SSNADITKGN EFFLKGEFKE AIDFYENGIA QNRSVAFYNI GVSYYLMGNI KKSEEAFRRS
121 VAEDPTFREA LMNLAVVLIQ TDKLAEAEKY VEQLLKDDNS AKLLVNMANI HLKRGETAKA
181 AQYFREAMDK GDNSKYVLSN YAYFLMSVGE YKDGIQIIEK LEYKDYTDYY NLAKAYLNIN
241 MDKAALDSVE RALRINRTED ALSLAADAYH ALGDFYNEIK SLDFLIGINP DKEYMFRLAR
301 AYYLNGKMTQ SQNEIRSLIE TYPEIHKYYR LYYEVLIALG YIREAGEMAE DAYNKFKTDN
361 TLYTVVKHKI IYHEDVESIK SRLFVDRTSP YLELGRTAYY IAKDIMLKAR EHILNVPPET
421 DNDYYVFRSY ILQRYGKYDN ALAFAKGINN IRPESFWYRF VAYFNMGDIR GVQELLAEQV
481 ARKAEYRKLM RVSFHLVPRI EDIDFSYRFD GSFEDMLTTI LYPLFMDPDD MMDFVALGYK
541 MLQEDSKVVA LQELERSVEY SEGIKLNNDG VALLLDYKFQ QAYNKFEEAN KLLNNNPYAL
601 YNMGLAKLNL GDVNGAAKYF DTAILQNNYH FPAYLGMAVC FSKKGQMHKA MDYYNLVRDR
661 VEQVAEGKRK IPEPVIYAGF LAEMGFKGYT RVIDAIGDKK DDNSFLAAMV SIAEYMKTGN
721 FEALNPLQEP NTIFRGHALR DLLGTLEGET ATFDESIKVD RLYRFMKAYA ILKQGAGAPD
781 IKPEEYPDDI MVLKELVYYT ILMSDRDKSL EYLQQLSRIT IRSTELYKAS LYYFMWVEDF
841 VNAEASYTSL DSLNYTDSYV DYYKMLYFML NYNGRRLISS VKSYMKEYPA DIKGKAVRIL
901 YSIKEEDFEL ALNSLNDLKK EDSNFLKSLP LEMTIDGL
//