LOCUS ADD67940.1 1322 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 multi-sensor hybrid
histidine kinase protein.
ACCESSION CP001968-1133
PROTEIN_ID ADD67940.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_1168"
/inference="protein motif:TFAM:TIGR00229"
/note="TIGRFAM: PAS sensor protein; PFAM: ATP-binding
region ATPase domain protein; response regulator receiver;
PAS fold-3 domain protein; PAS fold domain protein; PAS
fold-4 domain protein; histidine kinase A domain protein;
KEGG: gme:Gmet_1707 PAS/PAC sensor hybrid histidine
kinase; SMART: ATP-binding region ATPase domain protein;
response regulator receiver; histidine kinase A domain
protein; PAC repeat-containing protein; PAS domain
containing protein"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR001610"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR008207"
/db_xref="InterPro:IPR013655"
/db_xref="InterPro:IPR013656"
/db_xref="InterPro:IPR013767"
BEGIN
1 MNKNKSFLSD KIVLQVIFYV IFVVGSIMSV FIIDNYMHKR LSFLNGLLSN ETSRIHLNDI
61 LKSKMSDVQN TLLNYTNARS FDEMEKYEKQ IANSIESMES ILFILEHGGV YVEDMNVNYE
121 GLENVKYKVE YEKNYVGRFN IHVLDIQAKV VDIKELLDKF RSLVIDIILS RQSGSVEAFR
181 EVDERKNIMT KSMEAFFVRM DESSNRLYLE AEKSENELKS YIESSMVKFS SQKLRLNLAL
241 GIIFLVSGVL MCMNILRIVK SRLTVSEELN KLNSSLEETV KKRTGELETQ VRIREEQERE
301 SFERAQFLTD VIESLAHPFY VIDAETYEII LANKAAYRSI GSTGRTCYEL THHANHPCDG
361 LDHPCPLQTV LKTGAATSVE HIHFDQSGEK RYVEVHGYPV RNSEGKVIQM IEYSLDITEK
421 KDAERTLINL NSILEQKVAE RTEKLEAEVK NRKNAEEKLI ANEKYFRQLI ANISDIIIIA
481 DETLRITYVS PSIEQICGFP PEYLLGKPLE YLVQESDGVI FDHWIENVLR RHGEQRVAEL
541 RILKRSGAYL NAEVLAKNML ENNVINGVVV NIRDVTVRKK AEEELKKLAL VMEQNPNSIV
601 ITDIDGNIEF VNPAFEKITG YSLEEALGKN PNVLKTDHTE PAVFEELWKT VTKGEVWNGE
661 FVNKKKNGEL YIEHAIIAPI MNDRGEIVNY LGMKENITEL KQARAKAEES NRAKSMFLAN
721 MSHEIRTPLN GLMGFLELLK HTPLDSEQAE YLSTIKFSAD TLLKILNDIL DLSKIESGMM
781 DIESSEMNLG FQILSTVKAF YAKASAKGVR LYSYIDPQVP SSLLGDALRI SQVVSNLLNN
841 AVKFTHAGGV IKVNVELKNE TKKTATVLIA VEDTGVGIPD GKIKSVFEPF AQVDSSVTRK
901 YGGTGLGLTI SRNLLKLMKS DIELKSEKGK GSKFYFELVL KKTISVNSDK KNIGNGRVYI
961 YEGGSAELYT LFRKYLESLN GSYKLIDAID PDEDYTGSVF IFNGDSYEAD IVSELLDKGV
1021 RVVCVMEASE KAYAESLDDR VVTLFRPFGG ALFYEALTGH SFDEEEDVMQ SIKNMQSFDG
1081 CVLLAEDNSV NIRLMEALLR RLGVDADVAE NGQIAVDLCE TKKYDLILMD INMPVMDGIE
1141 AVRTIREHEN ALYRSRTPIY ALTAHSLTDL GGRINKSDFE GYLSKPINLE ALEKILKKHL
1201 KKSEIISYSG EAFNMSEIVD ELGLPDDMLY ELLNGYSVSL TGDIANMKSL AENEEYNMLK
1261 SLIHSNRGAA DNLRLKTLAV LFEEIEKSIN VKDKDGIINN IDQLDTELVN VRLILDQQRG
1321 GD
//