LOCUS ADD67644.1 1116 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 methionine synthase protein.
ACCESSION CP001968-837
PROTEIN_ID ADD67644.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_0864"
/inference="protein motif:TFAM:TIGR02082"
/note="KEGG: nis:NIS_0549 5-methyltetrahydrofolate--
homocysteine methyltransferase; TIGRFAM: methionine
synthase; PFAM: homocysteine S-methyltransferase;
Methionine synthase B12-binding module cap domain protein;
cobalamin B12-binding domain protein; dihydropteroate
synthase DHPS; Vitamin B12 dependent methionine synthase
activation region"
/transl_table=11
/db_xref="InterPro:IPR000489"
/db_xref="InterPro:IPR001000"
/db_xref="InterPro:IPR003726"
/db_xref="InterPro:IPR003759"
/db_xref="InterPro:IPR004223"
/db_xref="InterPro:IPR006158"
/db_xref="InterPro:IPR011822"
BEGIN
1 MFNEFAKNRI ILFDGAMGTS IQNYEITDEI WQGYNGCSEW LNVAAPEIIQ QIHEQYFEAG
61 ADVVETNTFG GTELVMSEYD LQDRTYELNL LGAQIARRAA DKYGKYTAGS IGPGTKLPSL
121 GQISYDDLYT MYHSQAEALL EGGVDLFIIE TCQDLLQIKS ALNAVIDVKA EKNSDAPVMV
181 SITVEQNGTM LMGTDISAAV TLLREYPVFS LGLNCSTGPD LMHNPINDLA QNFNGRISCI
241 PNAGLPENRG GQMVYDMTPD KMAKIVEGMV QEFPIGVLGG CCGTTPEHIK ALRPIADKYK
301 PNKPQAKEYT GESSSLYVST TLMQTPPPAL IGERANANGS KAFRELLLAE DFDGMLAVAK
361 EQEETGAHFI DACVAYAGRD EKADMAKFMH LLNKTLTAPV VIDSTEPDVV ETALKSCAGK
421 PVINSINFED GGEKLHIILR AVKKHPASVI ALTIDEDGMA MTAEKKFEIA ERIYNIFTKE
481 YGLNPNDLIF DPLTFSIGSG DKTLVDAAIQ TNKAIKMIKE KLTGAKTALG LSNISFGLSK
541 DSRPILNSVF LHEAVEHGLD MAIVHASKVM PQAAIPEEDI KVSKDLLAGQ EGALSAFIEH
601 FSKKEGIVQQ EEKTDLPPDE MLKNLIKKGR KAGLEETLTA LMQTMKPIEI INNIMLDTMK
661 EIGELFGAGK MLLPFVLQSA ETMKTAVTVL EPFMEKSDTE TRGRIVLATV KGDVHDIGKN
721 LVDIILSNNG YEVYNLGIKV SVEEMIAKAV EMDADAIGMS GLLVKSTNIM RENIAEINRQ
781 GLSKKVLLGG AALTEKFVKN DCMPIMPGMV SYCRDAFDAL KVLSGESEGS IAPEKTYADI
841 SAKPKKVQSP KLETPPAPPF FGVKTAENYT ADDILEYMNK LALFSHRWGY SKKNMPDYEY
901 EELLTKTVIP EFNETVQEIK DKELLEMGIR YAYFPCNSDG EELIVYNEDG SELTRFVFPR
961 QNLENGVCLA DYFHPVSSGV KDVVAFHIVT AGSKPAEYCQ QLFKNNEYKK YYQFHGFFTE
1021 FAEAMAEYAH KMIRTDLKID HADAKTAHGI ISLGYSGRRY SFGYPSCPDL AQNNQLDSIL
1081 DFSQIGVSIT ENHEMVSEYT TCAIIIHNSS AEYFTT
//