LOCUS ADD67444.1 818 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 conserved hypothetical
protein protein.
ACCESSION CP001968-637
PROTEIN_ID ADD67444.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_0656"
/inference="similar to AA sequence:KEGG:SUN_1091"
/note="KEGG: sun:SUN_1091 hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR000209"
BEGIN
1 MPEKLPHIFL KGLAEPNKIR GQKSPQGSKI PVRTSKSHAQ ELLKTYQTLV TSFSNRKIEE
61 IGEVEPTQGV YVEFSGLPEH DLAWDRLDKS GLKLLNTKLH EDKAQYATVF ISSDKLEVFN
121 KKIDSYLDSY DEAISEQKNP KQKYLIESIE QIHQATVESI IVDGVAPGKT EKWFEVWLIA
181 KKESANDKFE EFRKVTRALQ IVTSGSYIVF PDRIVTLAKV SNDSIVKILE YQADVAELRE
241 VKALASFWDR MEASEQVDWA KDLYERLTID NKNNVYICLL DTGVNNEHIL LKEFLSDKDS
301 ISYDPSWSTV DKDGHGTNMA GIACYGDMVN ILETSEPVII NHQLESVKVT PDSGKNPEEL
361 LAKITMDSIS SIEILEPMRR RFFCSSSTSD ASLCVGNPSS WSGAIDQLCF GTLDGHKRLF
421 IQAAGNLHDE EAISYPFVNL ASKIEDPCQA WNSVVIGGYT EKISIDDDLY HGCRVIAPKG
481 GLCPASKTSS TWTRRWPIKP DVVFEGGNLA VCSDMVTKAA DLSLLTTSHQ PMKRQFDAFY
541 ATSAATAEAA NFVAKLTNDY PDAWPETLRG LLVHSADWTE EMYKQAEADP SNRKSDPTRM
601 LLRMFGYGVP SYEKASYCIS NRLVMISEAS LKPFVLEEGK SSVSMNEMHI YELPWPVDVL
661 ESLGDTEVKL RITLSYYVDP SPDNIGWQSN NGYPSHRLKF DMNTPLEEKE KFILRIGKDS
721 DEKPDTSNNS TRWAVGPQER NRGSVNSDIW IGPASEISKC GIIAVYPASG WWKNRKHLEM
781 YDNEARYSII ISIETPVLEE SIYDFVDNIV RNKQSIVI
//