LOCUS ADD67362.1 1243 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 hypothetical protein protein.
ACCESSION CP001968-555
PROTEIN_ID ADD67362.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_0564"
/inference="ab initio prediction:Prodigal:1.4"
/note="KEGG: sat:SYN_01875 DNA transfer and F pilus
assembly protein"
/transl_table=11
BEGIN
1 MEFDFYVYGD FTSIVNAFKM VAGIFSSNSY KSWITILMIF ASAAFAFHMN MERAFGAKMN
61 DSVWIKRLFW GMALYSIFMV PTVTMHIYDP VKNRYEAVGG VPLGAGMIAS VTSSASRELT
121 DIIETAGSPI MSANDIGFGD GFELLAASSA MGQIGNMNDH FLAKSVYDYI EKCFRQAYAN
181 GDITDKDIWT SNNLLESFSL NYRVFSSVIY DNANPEGVLY ECADAYTNIS TRLMSPTFTE
241 NVMYKFCSQS GFNVSNTSEY QACKDKFTGL VDSFATDIGF SITLSNYVAS AFIARQYLMG
301 GVNAGTQNAI DIAKSMATAA NTVAGGVADE YIPKLQGMII TILIATFIIV ALFVYMAPVD
361 AFKWYIGMWI WVIMWFVVDA ILNVNVQAHA YEVFRDIRST GVGLNSMFYT GSDTLKVLAM
421 YSNARWISMS LASVISFGII KMGGSAAFAS MTSALGQQYR SSAAGVGSQL GTPGGQADFN
481 SKLFDKASDL PSMTGLKTPD NLAVAQFNRS SDVGKHFESG SRIMEKYSND STSASQAMGA
541 GDYAKNMEQI GHGAGALSAE SATGVSIEGA HSATAQKRHG EMAGTAELLD NSKVSIDDYK
601 EISKTSALDS KGRSEAAREM SDTLGLDYDT ISKDINTKSG LEKHASYMNI KKLAENGGLN
661 MSELFDKTTR SAKLSLNDSE ADKLGLAGAG QYSVSWDDSG KFTYTDMRSG DYSQQNFESI
721 DVKDSDGNIR TLIGATAEAK GDKLNISGTD ENGNLISISG VGMVREGENG DASAEFTAIS
781 NQSKERATTS RMTFGEMNIL QPDGSHTTLS GVSSETINDG LIIRGTDKDG NKVTMEGIGD
841 ISIGKDGVGL AEFSKVSIDK SENIYKSVVD HLNTVQKGSR VEDVDKTVYD RSRKYDGAFT
901 AILDKESATE MAGQITGSGE YAKEADAQAR AIAKDMSEIY KSKGVIAGTT YVGTGGLMNA
961 QASLGLSFLG SGVKGSVSAN TSVGIERKNT EKEEYDLNIS LIKGMQKQAH TIATGETGKL
1021 DETLYNETLG TMYNDMATKL NNVSENTSKL QFGASAVFGE AWHTLSTDQV KDILNNPTTI
1081 IPDNKDSIEN DLNTAIRQND DKKPDIEIKS ESSAENITAG ISPLESHEHK TDINVSTQTQ
1141 NDLATESNEI SNAGYAQKDI TSKNDIKPQQ MDSIPTDEKK PQNTEESKKI LNEKDDPISN
1201 YQNIQIIQNN PKDILNNSEF NIPINDLREE IPKETFNDKR RRK
//