LOCUS ADD67322.1 1038 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 exodeoxyribonuclease
V, gamma subunit protein.
ACCESSION CP001968-515
PROTEIN_ID ADD67322.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_0524"
/EC_number="3.1.11.5"
/inference="protein motif:TFAM:TIGR01450"
/note="TIGRFAM: exodeoxyribonuclease V, gamma subunit;
KEGG: gur:Gura_0582 exodeoxyribonuclease V, gamma subunit;
PFAM: Exodeoxyribonuclease V RecC subunit"
/transl_table=11
/db_xref="InterPro:IPR006697"
BEGIN
1 MLKIYTGNRL ERLLEKMDMN ICSAGSGPLT KVPICIQTPG MQRWIGIKLA ELTGISANLD
61 FIFPGALMKR LAGVGAGEKA PWPEKNELVW KVYSKLNSLP SEQFYEHIRN YLEGDINGIR
121 AYRLAGRIAD VFDQYQVYRP QMVLDWLSVK PKNPPVEDND IWQMELFRSI FPHGSGCKTT
181 IFDKFIKNCT KGANNCPALK TPIHIFGISV LPAFFIEMLK AASQYTDIYF YLLSPTRQYW
241 GDSKTIREKR RLEKITQKSA EELYIEEKHE LLDNLGVIGR DFFDYLFGSD DSFLTEEEYF
301 DIAKNSVLQT VQAEILDLEY GNEKPSHDNS IIINNCHNPL REMETLYDQL LELFNNDQTL
361 RPSDILVMTT DIEKYAPYIK AVFDNPYSER ERIPYSIADV SEKQTNRPAG IFLELLSTLR
421 GDFSLADVMR ILSYDLIADK FSIKRSDLST LSTMLQNAGA MWSYGREHLR KEGLTIDDTF
481 TWERALRRVA LGLAEGSSGS IYSEAAVKNV PFSLSVQIGG LMRFADLSSK YAEQMDSEKT
541 IPEWCALMQA LADDYIKETF DNADDILHLS KCIADINTEA ENGDFTEAVP AAPVLERLTE
601 SLSETRGAKG FISGRVTFCA MLPMRSIPFR VICVAGLDEN TFPRQKVSLE FDLMAKSPKP
661 GDRNNRDSDR YLFLETLISA QDTLILSYTG QSERDNAELL PSTLITELNT HLKGRFGIED
721 ITLKQKLHSF SRDYFSNEKL FTYSSDKYNT SRAFSSEKTG HRFSTLPIEV QMPDEVSLAD
781 FENFFISPPD YFLRKVLEIR PKLRDESLPE NEIMCPDPLL QYKIIDNALR ERLEGKDPDN
841 ALEYLYKTAQ LPPENLGRLS ITETLNTSME LNRTVTETLG GTPEEQKIDS AIDGLHISGT
901 IFGVSGNRYV YAKPASIKPK DIIRGWIRHL LLCQKASITT TLCGGGNTVE IPPADSGHLN
961 NLVEIFKEGH KSPLRFHITD GIRELNDRVL KSSFLEDSHN SVASDYAFRI CFGADTTLDR
1021 DAAEKIINPL LLTLRGAK
//