LOCUS ADD67169.1 690 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 translation elongation
factor G protein.
ACCESSION CP001968-362
PROTEIN_ID ADD67169.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_0369"
/inference="protein motif:TFAM:TIGR00484"
/note="KEGG: gsu:GSU2860 elongation factor G; TIGRFAM:
translation elongation factor G; small GTP- binding
protein; PFAM: protein synthesis factor GTP-binding;
elongation factor G domain protein; elongation factor Tu
domain 2 protein; elongation factor G domain IV"
/transl_table=11
/db_xref="InterPro:IPR000640"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR004540"
/db_xref="InterPro:IPR005225"
/db_xref="InterPro:IPR005517"
BEGIN
1 MARKVALDMQ RNIGIMAHID AGKTTTTERI LFYTGVNYKI GEVHDGNATM DWMEQEQERG
61 ITITSATTQC FWKDHRINII DTPGHVDFTI EVERSLKVLD SACAVFCAVG GVEPQSETVW
121 RQADKYKVPR IAFVNKMDRT GANFFNVVNQ LKERLGANPV PIQLPIGAEE KFEGVIDLVE
181 MKAVIWNGEE LGASFDVVDI PAEYKEQAEE YRTALIEAVA DSDEALMEKY FEGEELTVDE
241 IKAGIRKCVI NISFIPVLCG TAFKNKGVQT LLDAVTMYMP SPLDVPAIKG INPDTEQEEE
301 RPADDNAPFS ALAFKIMTDP YMGQLTYFRV YSGKLEAGSY VVNSTKDKKE RVGRLLKMHA
361 DKREEIKDIY AGDICATVGL KYTTTGDTLS DPDHRVILES MTFPDPVISV AVEPKSKGDQ
421 EKLSQALQKL AQEDPSFRVK VDEETGQTII SGMGELHLEI IVDRMMREFK VEANVGNPQV
481 AYREAITKSV SGEGKYIKQS GGRGQYGHVC LELHPLKPGE GFVFENKIVG GSVPREYIPA
541 IEKGIEESLS NGCLAGYPVE DIKAVLFDGS YHDVDSNEMA FKIAASMAFK DLSKKAGPVI
601 LEPIMKVEVV APDEYTGDVM GDLSSRRGKV EGMDMRGGAQ VIKCMVPLKE MFGYATQLRS
661 ITQGRATYSM HFDHYTQVPN NVAEEIMKTN
//