LOCUS ADD66987.1 620 aa PRT BCT 10-SEP-2019
DEFINITION Denitrovibrio acetiphilus DSM 12809 multi-sensor signal
transduction histidine kinase protein.
ACCESSION CP001968-180
PROTEIN_ID ADD66987.1
SOURCE Denitrovibrio acetiphilus DSM 12809
ORGANISM Denitrovibrio acetiphilus DSM 12809
Bacteria; Deferribacteres; Deferribacterales; Geovibrionaceae;
Denitrovibrio.
REFERENCE 1 (bases 1 to 3222077)
AUTHORS Kiss,H., Lang,E., Lapidus,A., Copeland,A., Nolan,M., Glavina Del
Rio,T., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Goodwin,L.,
Pitluck,S., Liolios,K., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Detter,J.C., Brettin,T., Spring,S., Rohde,M.,
Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Denitrovibrio acetiphilus type strain
(N2460)
JOURNAL Stand Genomic Sci 2 (3), 270-279 (2010)
PUBMED 21304711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Denitrovibrio acetiphilus DSM 12809
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3222077)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Mikhailova,N., Kiss,H., Brettin,T.,
Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V.,
Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Lang,E., Spring,S.,
Kopitz,M., Schneider,S., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083324
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Denitrovibrio acetiphilus N2460, DSM 12809
Culture Collection ID :: DSM 12809
GOLD Stamp ID :: Gi02322
Greengenes ID :: 43329
Funding Program :: DOE-GEBA 2007
Sequencing Depth :: 7.84x Sanger, 27.5x pyrosequence
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Oil reservoir model column
Isolation Country :: Norway
Oxygen Requirement :: Anaerobe
Cell Shape :: Vibrio-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Fresh water, Marine
##Metadata-END##
FEATURES Qualifiers
source /organism="Denitrovibrio acetiphilus DSM 12809"
/mol_type="genomic DNA"
/strain="DSM 12809"
/culture_collection="DSM:12809"
/type_material="type strain of Denitrovibrio acetiphilus"
/db_xref="taxon:522772"
/note="type strain of Denitrovibrio acetiphilus"
protein /locus_tag="Dacet_0182"
/inference="protein motif:TFAM:TIGR00229"
/note="TIGRFAM: PAS sensor protein; PFAM: ATP-binding
region ATPase domain protein; response regulator receiver;
KEGG: gsu:GSU1249 sensory box histidine kinase; SMART:
ATP-binding region ATPase domain protein; response
regulator receiver"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR001789"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
BEGIN
1 MKKILIVEDE IIIGLDVARR LGKLGYQVTE TATRPDQALE SIKIDKPDLI MMDINLKSDI
61 DGVELAAMIR KDNDIPVIYM TSYSDGSMID RAIQTEPYGY IIKPYTDGML IASLRTAFAR
121 KELENKNRSQ HEMLQGVMDN ISDSIVLIRG SGEIIRTNSR FSELVGADNL VGKNIEDVLG
181 GSPDIETLHN IGSSRSGEMF TAKIGGAEKS ILIHTSDFVW EGRKSTLLTI TDLTEIIAVR
241 SALSDAEQRF TKIFRKKMIP AVLVSCEGMR LFEMNDAFAQ LYKVSQDVEA DISISEYIGS
301 EALKAVEQSM DADKSFRVDM IRQKDKEGRE FFANFRGKRV EFDSASFFLF DVHDVTEQVR
361 ISEMERELQQ KLIHANKMTS LGTLVSGVAH EINNPNNFIM FNSSLLVDFW SDIFDHLDDK
421 TPGQSIGNMT LAEFRSDIEE LMHGIINGSE RIKNIVQDLK GFAKTESSGY SERLNIENTL
481 RTSVRILEHQ ISKTTGNFIM DIAPGLPDVN GNEQKLEQVF INILMNALEA VASGDSLVEV
541 KCYPSAGKVV VDFTDKGVGI PSDHLDRITE PFFTTRQNCG GTGLGLSIAY AIIKEHKGVI
601 DISSTPGEGT CVRIQLPGCE
//