LOCUS ADD45162.1 963 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 transcriptional regulator,
SARP family protein.
ACCESSION CP001778-5439
PROTEIN_ID ADD45162.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_5531"
/inference="protein motif:PFAM:PF03704"
/note="PFAM: transcriptional activator domain; TPR repeat-
containing protein; NB-ARC domain protein; transcriptional
regulator domain protein; SMART: Tetratricopeptide domain
protein; KEGG: scl:sce5225 protein kinase"
/transl_table=11
/db_xref="InterPro:IPR001440"
/db_xref="InterPro:IPR001867"
/db_xref="InterPro:IPR002182"
/db_xref="InterPro:IPR005158"
/db_xref="InterPro:IPR013026"
BEGIN
1 MGISVTAPLR FQLLGPVRAW RDGEELRLGS PQQRLVLVRL LIGEGRPVSI DQLSATLWRD
61 DPPPAARSTV RTYLSRLRSV LGAGIIDSRE HWYSLRVGEV DAWRFAALLR EAEATPDRDR
121 ARRLLSQALD LCQDIPLAEL PGEWARAQRI RLEEERDRAV ERRARLDLDF GRPADAAAAL
181 ARLCAEYPLR ERPHQLLMLA LYRDGRKAEA LTVHNDLRRR LAEQLGIDPG DETAELHRRI
241 LRADPELAAP PPIAAPDAEP PRRGPAQLLA DIPDFTGRDD VVRELTALLT EERDAAPVVV
301 VTGIGGAGKT TLATHVGHRV AADFPDGQLY VDLRGADEVP HEPLAAQRGM LRSLGVSTED
361 IPAAEDECAA LFRSTMASKR LLLLLDNAAD TAQVRALLPG AAGCAAIVTA RSTLTGLTGA
421 RYVRLSALEP GEAVTLLRRV VGTERVDAES AEALNVVTAC GSLPLAVRIA AARLVARPQW
481 TVGQFAERVR DEQRRLAELR AGDLAVEAAF ALSYRQLDEQ HAHAFRLLTV PDAPELALAT
541 AAAVLGRGEL DTEGLAEDLV DLNLLESPAY RRYRMHDLTR LFGRGKTDAA ERDAALRRLA
601 DYYVATAYNG RRAVESDGRV INGVLPTASE GTGFASAAEA ERWLDTETDA LLLTLRQLAR
661 QLPAAVRLAG DLLRVIANVH IISSPRRGDL FAAAGAIAAA ARTHGDAFTE GRALLQQADC
721 HLAEARFTEA KALATTALEL AERSGDGYGH ASSQACLGVT AFYADDDPEA AVKLFSAAYE
781 GFSALSVGAE AGKLLATRAR ILLRLGRRTE AVADAVEAVA RLREHGVGTA LADGLYQLGT
841 IRQSIGDLDA AVASLTESLE LHRALRRNVH EGLSLYRLAE AELGRGDART AHRHAEAAIA
901 KFTDIGDQWG RHSAEVVLGR ILLATNEPAR ARELIGNAAT GLEALGRDTE AAEARAILDD
961 QSP
//